1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaaattaaggatgacgaaacttcttcaagttaattatgaagcacattttattcttgtagaatttagcttttctgatctttatttggctacttattttcagGGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACGGCCACAGCTGTGAAATTTGCGCTTGATATTGCAAG
species | Vitis vinifera |
transcript | Vv10s0003g02060.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAG GGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACAGCCACAEST: gi|30255070|gb|CB971517.1|CB971517
genomic: CTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAGgtttttttca ... ttattttcagGGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACGGCCACA
EST: CTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAG GGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACGGCCACAEST: gi|71890043|gb|DT039098.1|DT039098
genomic: CTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAGgtttttttca ... ttattttcagGGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACGGCCACA
EST: CTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAG GGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACAGCCACA
genomic: CTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAGgtttttttca ... ttattttcagGGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACGGCCACA
ttttattcttgtagaatttagcttttctgatctttatttggctacttattttcagGGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACGGCCACAGCTGTGAAATTTGCGCTTGATATTGCAAG
ttctgat putative branch site (score: 3)
cttattttc putative PPT
atctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaattaaggatgacgaaacttcttcaagttaattatgaagcacattttattcttgtagaatttagcttttctgatctttatttggctacttattttcagGGAGATCTTCATGCATTCTTGAAAAGAAAAGGAGCATTAAAAACGGCCACAGCTGTGAAATTTGCGCTTGATATTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
-aaattaa
- - - - - - -acgaaac
- - - - - - - - - - - - - - - - - - - aagcaca