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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttgagcattacaaaatgacagaaatttgtaggttctgcttgttgatgaaatataattggcaaatcataaaaaatattaatctaatatccttcaatttgttgtgcttcattattttcttacatatttcccaatgtttttctttctcttcccatcttaactcttgcactccaatttggcaatgtgcagGGAATCAAGTTCTTTGAACCGGAG

Basic information

species Vitis vinifera
transcript Vv10s0003g01640.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584507|gb|CB007202.1|CB007202
EST:     TTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAG                         GGAATCAAGTTCTTTGAACCGGAG
genomic: TTGTTGGCCCTAAGGAAGGAGACACTCCTGACAGGGCAAAGTACAGTCAGgtatgatttg ... caatgtgcagGGAATCAAGTTCTTTGAACCGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttctttctcttcccatcttaactcttgcactccaatttggcaatgtgcagGGAATCAAGTTCTTTGAACCGGAG
                    tcttaac  putative branch site (score: 2)
                   atcttaa  TA-rich tract