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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctcccacacacagaaactgtcttttctatctttatataatgcaaaatggtgattgattcaatgttacttcaatatttcagGGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAAAGACTACAG

Basic information

species Vitis vinifera
transcript Vv10s0003g01490.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01490.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G09100.1 (Glycine max), 3'ss of exon 5
gtaggtctcccacacacagaaactgtcttttctatctttatataatgcaaaatggtgattgattcaatgttacttca-atatttcagGGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAAAGACTACAG
||| |        |         | |  | | | |  ||| ||  |  ||| |         |||| | ||    |  || ||  ||||| || |||||||| ||||||||||||||||||||||| ||  | ||||| |  || ||
gtatgcactttttatcacagttttattgtatttttgcttaaatccttaaaagta-----catttcattattgtaccgtatgttgtagGGATTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAGGGTTATAG

upper sequence: Vv10s0003g01490.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G30050.1 (Glycine max), 3'ss of exon 5
gtaggtctcccacacacagaaactgtcttttctatctttatataa-tgcaaaatggtga-ttgattcaatgttacttcaatatttcagGGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAAAGACTACAG
||| |      |  |||||      ||| || ||| |||   ||| | |  ||  || | |    | | |||| | |  || ||  ||||| || |||||||| ||||||||||||||||||||||| ||  | |||||||  || ||
gtatgcactttat-cacagt-----tctattgtatttttgcttaaatccgtaaaagtaaatctcattactgttccatatatgttgtagGGATTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713153|gb|EE088826.1|EE088826
EST:     TCTGGACAGATCCCTGGGCTTGTTGCAAATCTTACAAGTCTTTCATTCTT                         GGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAA
genomic: TCTGGACAGATCCCTGGGCTTGTTGCAAATCTTACAGGTCTTTCATTCTTgtaggtctcc ... aatatttcagGGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatctttatataatgcaaaatggtgattgattcaatgttacttcaatatttcagGGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAAAGACTACAG
                         gattgat  putative branch site (score: 4)
     tttatataatgcaaaa  TA-rich tract