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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtagaaattttgatgcctgtattttaattcttaaatctctcatatcagaaaagaaaagtcggtattctttttccctctcactgataccattcaccttggtttctccaaatatctatcagCTTGGACGGTGCGTGGAAATTGGCATACCCATGCTTTTCCTATTTATTGCCTTCTCCCAG

Basic information

species Vitis vinifera
transcript Vv10s0003g01460.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30133322|gb|CB918661.1|CB918661
EST:     CAGTGATCTCGTTAGTGGGTTTTGGGCTGTTTGACAGAGGCTTCCCAGTG                         CTTGGACGGTGCGTGGAAATTGGCATACCCATGCTTTTCCTATTTATTGCC
genomic: CAGTGATCTCGTTAGTGGGTTTTGGGCTGTTTGACAGAGGCTTCCCAGTGgtatagtaga ... tatctatcagCTTGGACGGTGCGTGGAAATTGGCATACCCATGCTTTTCCTATTTATTGCC
EST: gi|161716943|gb|FC068140.1|FC068140
EST:     CAGTGATCTCGTTAGTGGGTTTTGGGCTGTTTGACAGAAGCTTCCCAGTG                         CTTGGACGGTGCGTGGAAATTGGCAT
genomic: CAGTGATCTCGTTAGTGGGTTTTGGGCTGTTTGACAGAGGCTTCCCAGTGgtatagtaga ... tatctatcagCTTGGACGGTGCGTGGAAATTGGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttttccctctcactgataccattcaccttggtttctccaaatatctatcagCTTGGACGGTGCGTGGAAATTGGCATACCCATGCTTTTCCTATTTATTGCCTTCTCCCAG
              cactgat  putative branch site (score: 3)
                                          aaatatctat  TA-rich tract