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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggaaggctctttatgattcattactataaaataatcatcttagccaatttatttaatatctttaatgtgtttttgtttgtcttgcagAGCTGCTCTGGGCGCATTTAGCTGTCGCATTCTTTATGCTAATGTCTCTTACGATC

Basic information

species Vitis vinifera
transcript Vv10s0003g01230.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22011609|gb|BQ796643.1|BQ796643
EST:     CCACCTCTTCTTCTGAGGATGGCATCCGACTGTGAAGATGGAAAATTTAT                         AGCTGCTCTGGGCGCATTTAGCTGTCGCATTCTTTATGCTAATGTCTCTTA
genomic: CCACCTCTTCTTCTGAGGATGGCATCCAACTGTGAAGATGGAAAATTTATgtgaggaagg ... tgtcttgcagAGCTGCTCTGGGCGCATTTAGCTGTCGCATTCTTTATGCTAATGTCTCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatcttagccaatttatttaatatctttaatgtgtttttgtttgtcttgcagAGCTGCTCTGGGCGCATTTAGCTGTCGCATTCTTTATGCTAATGTCTCTTACGATC
                           ctttaat  putative branch site (score: 4)
                                     tttttgtttgtctt  putative PPT
             aatttatttaatatct  TA-rich tract