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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacagaaatctatatgattatacagtgttatagaaaagcattaactccactattgtccaagcatgttattttcttgttatacagtttacactacttaaatctctgtcatctataatgcttttattttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGTCGATACCCTTAACCCTATGGCTATCTCTGGCCCCTGTTGTTCTTG

Basic information

species Vitis vinifera
transcript Vv10s0003g00300.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 5
gtgacagaaatctatatgattatacagtgttatagaaaagcattaactccactattgtccaagcatgttattttcttgt-tatacagtttacactacttaaatctctgtcatctataatgcttttattttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGTCGATACCCTTAACCCTATGGCTATCTCTGGCCCCTGTTGTTCTTG
                                                  |  |  ||  | |     ||| | |      | ||| || | | | | |  ||||   |  |  | | || |    || |||||||||||||||||| |||||||||||||| ||||| || || ||||| || || || || ||| | ||  | ||||| || ||||| ||||||||| |||
-----------------------------------------------gtgataaaagtttatgatatatatatacacacacacacacttgaaaatgcatgtatctactttcta-acattgataaacttgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G24360.1 (Glycine max), 3'ss of exon 5
gtgacagaaatctatatgattatacagtgttatagaaaagcattaactccactattgtccaagcatgttattttcttgttatacagtttacactacttaaatctctgtcatctataatgcttttattttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGTCGATACCCTTAACCCTATGGCTATCTCTGGCCCCTGTTGTTCTTG
|| | | || | |||  ||| ||| |        |  || |  ||  |  |    | |  |   || |   | | |   |||| |   |||||   |  | | |||  |||  ||||        || ||||||||||||||| || |||||||||||||| ||||| || || ||||| || || || || ||| | ||  | ||||| || ||||| ||||||||| |||
gtaataaaagtttatgagat-atatac-------gtgaaactatatatatatatatatatatatatatatatatatatatatata---tacacgtatctactttctaacattaataaac------ttgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTG

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G46110.3 (Arabidopsis thaliana), 3'ss of exon 5
gtgacagaaatctatatgattatacagtgttatagaaaagcattaactccactattgtccaagcatgttatttt--cttgttatacagt-ttacactacttaaatctctgtcatctataatgcttttattttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGTCGATACCCTTAACCCTATGGCTATCTCTGGCCCCTGTTGTTCTTG
                                                    |||| |  || ||  ||  |    | |   | | |   || ||||   | ||  |||  |||  |||   |||||         |||| ||||| || ||||||||||| || ||||||||||| ||  | ||||| || || ||| |||| |||||| | ||||| || |||||||||||||
---------------------------------------------------gtattttttaaacaaatttatacaacataaaaaataacatttcactgaatcaaaatctaacattcata---cttttgcgaaaacgcagCACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTATGGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77583035|gb|DV220554.1|DV220554
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|26265652|gb|CA816715.1|CA816715
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351053044|gb|FQ456651.1|FQ456651
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTACGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351043311|gb|FQ444032.1|FQ444032
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|110733080|gb|EE108928.1|EE108928
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351027725|gb|FQ446892.1|FQ446892
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351018705|gb|FQ425607.1|FQ425607
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|349832754|gb|FQ422278.1|FQ422278
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACC-ACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351026096|gb|FQ428108.1|FQ428108
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTA
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTA
EST: gi|351021768|gb|FQ437153.1|FQ437153
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAA
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAA
EST: gi|351035554|gb|FQ463399.1|FQ463399
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCCTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351019225|gb|FQ429385.1|FQ429385
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|349813100|gb|FQ411340.1|FQ411340
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTNGAACCCTTCTTCAATGCTGCGGCTTCTCA-TTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351031379|gb|FQ445404.1|FQ445404
EST:     CACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|349829290|gb|FQ419822.1|FQ419822
EST:     CANTGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCCCACAATCAAAG                         CTCTTGAAACCTTCTT-AATGCTGCGGCTTCTCAATTTATACTAGG
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGG
EST: gi|71870783|gb|DT019838.1|DT019838
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351040323|gb|FQ434455.1|FQ434455
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|110697980|gb|EE075470.1|EE075470
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351057025|gb|FQ448542.1|FQ448542
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|352795621|gb|FQ480209.1|FQ480209
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351019213|gb|FQ429373.1|FQ429373
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTANGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|110710526|gb|EE086947.1|EE086947
EST:     CAATGTCTCCTTTGCAGCANTTGCCGTCTCCTTCACCCCCACA-TCCAAG                         CTCTTGAACCCTTCT-CAGTGCTGCGGGCTTC-CAATTTAAACTAGGACAA
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGG-CTTCTCAATTTATACTAGGACAG
EST: gi|351033235|gb|FQ462007.1|FQ462007
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|30252871|gb|CB970422.1|CB970422
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351022754|gb|FQ428663.1|FQ428663
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351053172|gb|FQ455629.1|FQ455629
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTANGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|349819996|gb|FQ404718.1|FQ404718
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCCATTTATACTAGGACATT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|18458226|gb|BM436504.1|BM436504
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351015899|gb|FQ431854.1|FQ431854
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351053057|gb|FQ456664.1|FQ456664
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCATCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|29786100|gb|CB343576.2|CB343576
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTG-GATCTTCTCAATTTATACTAGGACAG
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGG-CTTCTCAATTTATACTAGGACAG
EST: gi|351048322|gb|FQ449414.1|FQ449414
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|349824063|gb|FQ417450.1|FQ417450
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|349828478|gb|FQ417220.1|FQ417220
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTANGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351032134|gb|FQ460391.1|FQ460391
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|349830347|gb|FQ420607.1|FQ420607
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCCTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|352789998|gb|FQ479608.1|FQ479608
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCA
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCA
EST: gi|351028469|gb|FQ444750.1|FQ444750
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGACCCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|349829388|gb|FQ419920.1|FQ419920
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTA
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTA
EST: gi|351038519|gb|FQ464385.1|FQ464385
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|34542626|gb|CF510858.1|CF510858
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|352794370|gb|FQ481601.1|FQ481601
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|33401641|gb|CF207268.1|CF207268
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|352777333|gb|FQ473967.1|FQ473967
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTANGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|110389432|gb|EC954269.1|EC954269
EST:     TGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: TGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
EST: gi|351049192|gb|FQ449914.1|FQ449914
EST:     CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAG                         CCCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT
genomic: CAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaa ... tttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagtttacactacttaaatctctgtcatctataatgcttttattttgtttcagCTCTTGAACCCTTCTTCAATGCTGCGGCTTCTCAATTTATACTAGGACAGTCGATACCCTTAACCCTATGGCTATCTCTGGCCCCTGTTGTTCTTG
                                      cttttattttgtttc  CT-rich tract
                               tataatgcttttattt  TA-rich tract