1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tataacttgaacattattatgctcttgtaatcttttcttacaacagttacgttttttggcatatcttggttacagtttgcttctctttgtctgattgcagCACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTTGATGTGGTGGGCCCTGTCTGCGAATCTGCAGATTTCTTGGGGAAGGATA
species | Vitis vinifera |
transcript | Vv09s0070g00580.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAA CACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCGACTTTTEST: gi|30130303|gb|CB915642.1|CB915642
genomic: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAAgtaagtaatt ... ctgattgcagCACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTT
EST: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAA CACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTTEST: gi|110416615|gb|EC982607.1|EC982607
genomic: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAAgtaagtaatt ... ctgattgcagCACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTT
EST: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAA CACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTTEST: gi|30256273|gb|CB972116.1|CB972116
genomic: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAAgtaagtaatt ... ctgattgcagCACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTT
EST: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAA CACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCGACTTTTEST: gi|71875503|gb|DT024558.1|DT024558
genomic: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAAgtaagtaatt ... ctgattgcagCACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTT
EST: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAA CACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTT
genomic: ATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAAgtaagtaatt ... ctgattgcagCACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTT
gttacgttttttggcatatcttggttacagtttgcttctctttgtctgattgcagCACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTTGATGTGGTGGGCCCTGTCTGCGAATCTGCAGATTTCTTGGGGAAGGATA
gtctgat putative branch site (score: 4)
tttgcttctctttgtc CT-rich tract
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataacttgaacattattatgctcttgtaatcttttcttacaacagttacgttttttggcatatcttggttacagtttgcttctctttgtctgattgcagCACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTTGATGTGGTGGGCCCTGTCTGCGAATCTGCAGATTTCTTGGGGAAGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - -acaacag