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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG

Basic information

species Vitis vinifera
transcript Vv09s0054g01480.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
gtatggccacttgaaacacaagttcacattca-tcctatacaa-tgcattcttgtgtgatggactgaatct-tatatgatattgcttcttc-cgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG
                       ||||||||| |  || | || |  |           | |   | || | |   | | || | | || | | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | |||||   |||||||||||||||||
--------------------gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaaatggatcctactcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG

upper sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 4
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG
||||      ||   | |  | | || || ||     || |    | | |  ||||    | | | |   ||  ||| |||||  |     ||||||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | || |||  |||||||||||||||||
gtattattcttttttatatgaatacaaatacaaaaacta-atgaaactatgatgtgtactattcatttaaatg-gatcttgctctt-----gtagATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAG

upper sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG
||||      ||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||      | |    | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | || ||   ||||||||||||||| |
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatgg----accttgctcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcattcttgtgtgatggactgaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG
                                      ttgcttcttcc  CT-rich tract
                        aatcttatatgatatt  TA-rich tract