Sequence
atgc intronic sequence ATGC exonic sequence...ttccaggttcattttcctaatagtgaggaaaaaaataacccatcaaaatttaaacaggaaaatctatatttcttttgtaataggaaaatatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 3'ss of exon 5
ttccaggttcattttcctaatagtgaggaaaaaaataacccatcaaaatttaaacaggaaaatctatatttcttttgtaataggaaaatatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
||| ||| || | ||| | | | | ||| || | | ||| | || |||| | || | | ||||| ||||| || |||||||||||||| ||| |||| |||||||| |||||||| ||||||| || || || ||||| ||||| ||||||||| | | |
------gttttgttttatactcttgatatactatacatttcat-gtgtttgtccctccacaatagaatttcaaattgtgact---aatttctctaaacagATTGCTGTCCGCGCTGGTGGTTTCTCAGCCATTGTGGTTGTTGGCATGGCTGTTTTTGGTGTGGCAATACTGTATGCAACATTCTATGTTTGGCTTGAAG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G075900_T01 (Zea mays), 3'ss of exon 5
ttccaggttcattttcctaatagtgaggaaaaaaataacccatcaaaatttaaacaggaaaatct-atatttcttttgtaataggaaaatatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
| || ||||| | | | || | | | || || ||| | ||| | | || | ||| |||| ||||| || || ||||||||||||||||| ||| |||| |||||| | ||||||||| |||| || || || || || | ||||||||||||||| | || |
-----gtttggttttcgtttttg----gatgcacttggc--atttgcccttctacaatagaatttcaaatcatgtctgtttcctcaaaa---------cagATTGCCGTCCGTGCTGGTGGTTTCTCAGCCATTGTGGTTGTTTGCATGGCTGTATTTGGCGTGGCAATACTGTACTCAACATTTTATGTTTGGCTTGGAG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G24120.2 (Glycine max), 3'ss of exon 5
ttccaggttcattttcctaatagtgaggaaaaaaataacccatcaaaatttaaacaggaaaatctatatttcttttgtaataggaaaatatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
||| | | | || | | | | | | |||| || | || ||||| | | ||| |||| || ||||||||||||| |||||| |||||||| ||||| | |||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
------gttaaaccatc-attaattcatcatcagtt--tctgtgaaaac---aatgaacagttcactatttgtgtattaactggaaggaatt-tgtgcagATAGCTACTCGTGCAGGTGGTTTATCTGCTATCATTGTTGTTGGTATGGCTGTAATTGGTATAGCAGTCCTTTATGCCACATTTTATGTTTGGTTGGAAG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G00350.1 (Glycine max), 3'ss of exon 5
ttccaggttcattttcctaatagtgaggaaaaaaataacccatcaaaatttaaacaggaaaatctatatttcttttgtaataggaaaatatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
||| | | | || | | | | | | |||| || | || ||||| | | ||| |||| || ||||||| ||||| |||||| |||||||| ||||| | |||| ||||||||||| ||||||||| | || ||||||||||||||||||||||||||||||| |
------gttaaaccatc-attaattcatcatcagtt--tctgtgaaaac---aatgaacagttcactatttgtgtattaactggaaggaatt-tgtgcagGTAGCTACTCGTGCAGGTGGTTTATCTGCTATCATTGTCGTTGGTATGGCCGTAATTGGTATAGCTGTCCTTTATGCCACATTTTATGTTTGGTTGGGAG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 3'ss of exon 6
ttccaggttcattttcctaatagtgaggaaaaaaataacccatcaaaatttaaacaggaaaatctatatttcttttgtaataggaaa----atatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
| | | ||| || ||||| || || | |||| || || ||||||||||||||||||||||||| ||||| || || |||||||||||||||||||| |||||| |||||||||| ||| | ||||||||||| ||||||| ||
---------------------------------gtttgttttttagtatt--aataggaattcctgtacacatggccaaatactaagtgatggatttaatgcagATAGCTGTTCGTGCTGGTGGATTCTCAGCTCTGGTTGTTGTTGGTATGGCTGTGATTGGTATTGCCATCCTGTATTCTACATTTTATGTATGGTTGGACG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G78920.1 (Arabidopsis thaliana), 3'ss of exon 5
ttccaggttcattttcctaatagtgaggaaaaaaataacccatcaaaatttaaacaggaaaatctatatttcttttgtaataggaaaatatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
|||| | || ||| | || | ||| | | | || ||| | || || | |||| ||| |||||||| |||||||||||||| || || ||||| |||||||||||||||||||| |||||| | |||||||| ||| | ||||||||||| ||||||||||
------gttcttctttagtttagctattttggtaacatgtcatgtacacgtttccaa--------atact--------aagtggcagatataatg--cagATAGCCGTTCGTGCTGGTGGGTTTTCAGCCCTGGTTGTTGTTGGTATGGCTGTGATTGGTATCGCCATCCTCTATTCTACATTTTATGTGTGGTTGGGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatttaaacaggaaaatctatatttcttttgtaataggaaaatatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
tatatttcttttgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttccaggttcattttcctaatagtgaggaaaaaaataacccatcaaaatttaaacaggaaaatctatatttcttttgtaataggaaaatatcatgtgcagATAGCTGTTCGTGCTGGTGGTTTCTCTGCCCTTGTTGTTGTTGGTATGGCTGTAATTGGTGTTGCCATCCTTTATGCCACATTTTATGTTTGGTTGGGCG
- - - - - - - - - - - - -aggaaaa
- - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - -ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaat