Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT

Basic information

species Vitis vinifera
transcript Vv09s0054g00010.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 3'ss of exon 6
gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
     | || ||   || ||||   || |         | ||| |    |      || |   | || | ||   ||   ||| |||||| |||  ||  || || ||||| || |||||| |||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||
----gtttgccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtat--cagGGTTTGGGTAAGCATGACATCATCTGCATTGAGGATCTTGTTCATGAGATCATGACTGTTGGCCCACATTTCAAGGAGGCCAACAACTTCCTCTGGCCAT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 6
--------gtttttat-gtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttg--tgatgat-agGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
        | | || | | | |||  | | |||  | | |   |   |  | |    | ||  |  |  |  |||  | |||    |  || |||  |||||||||  ||  || || ||||| || |||||| | || |||||||||||||| || || || || |||||||||||||||||||| ||||| |
gtatgtttgctcttgtaggctttcattgtgttgtatatatgccatttacagctaatcaaattcttat-ttggcctattgttggtcaaccattagGGCTTGGGGAAGCATGACATCATCTGCATTGAGGATCTTGTCCACGAGATCATGACTGTCGGTCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCCT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G094051_T05 (Zea mays), 3'ss of exon 5
gttttta----tgtcattctgtatcttg-----gttttctatgagcg-attgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
|||| ||    ||  | |||  |||| |     || |||| |      ||       || ||  || |    ||||  |  |||  |   |||  ||||| |||      || || ||||| || |||||| |||| ||||||||||||||||| || || || |||||||||||||||||||| |||||||
gtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcagGGCTTGGGCAAGCACAACATCATCTGCATTGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCCAACAACTTCCTGTGGCCAT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 6
gttttta---tgtcattctgtatcttggttttctatgagc-gattgtttgctatatcttgt-tgctaacctgc----ttttgtga--tgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
||||  |   |     |||| | || | |  | | ||| | | |||| |   | |  ||   || | | || |    ||| |||   |   |||  ||||| |||      || |||||||| || |||||| ||||||||||||||||||| || || || || |||||||| ||||||||||| |||||||
gtttgcaatcttgagctctgcacctggatcctttgtgatctgcttgtatttgacaatttacatgatgatctccaccatttggtgttctatcagGGCTTGGGCAAGCACAACATCATTTGCATTGAGGATCTTGTTCATGAGATCATGACTGTCGGCCCACACTTCAAGGAGGCGAACAACTTCCTTTGGCCAT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G344279_T01 (Zea mays), 3'ss of exon 6
----------------gtttttatgtcattc-tgtatcttggttttctatgagcgattgtttg-----ctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
                 | |  || |  ||| ||| |  ||  ||| |||  |    | ||||      || ||  || |    ||||  | ||||  |   |||  ||||  |||      || || ||| | || |||||| |||| ||||||||||||||||| || || || |||||||| ||||||||||| |||||||
gtttgtaaacttggaactgtacatctggttcctgtgttctg--tttatatttgtttatatttgacaatttacatgatgatctccaccttttgttgttctatcagGGCTTGGACAAGCAAAAAATCATCTGCGTCGAGGATCTTGTTCACGAGATCATGACTGTTGGCCCACACTTCAAGGAGGCGAACAACTTCCTGTGGCCAT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G178807_T01 (Zea mays), 3'ss of exon 5
--------gttttta--tgtcattctgtatcttggt-tttctatgagcgattgtttgctatatct---tgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
         |    |  |  | | ||| ||||   |   || |    | | | |  ||  ||| |   | ||||| |||| || ||   || |||||   | ||||||  |  ||| || ||||| || || ||| |||| ||||||||||| ||||| || || || || ||||||||||||||||| |||||||
gtttttccatccacaactaccgtgctgaatctgattacatccacattccaatttccgccttatgtatattttgcttaccttctgttc--attatagGGCCTTGGGAAGCATAATATCATCTGCATCGAGGACCTTGTTCACGAGATCATGACGGTTGGCCCACACTTCAAAGAGGCCAACAACTTCCTCTGGCCAT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G100225_T01 (Zea mays), 3'ss of exon 5
--------------------------gtttttatgtcattctg--tatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttt-tgtg-atgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
                           |  ||  |  | || |  ||  |     ||  |    |     |     | |    ||   |    | |||| ||||  || ||||   | ||||||     ||| || ||||| || || ||| | || ||||||||||| || || || || || |||||||||||||||||||| ||||| |
gtttgtcacctgcaacaactaccgtgctgattccgataatccgattaggtccacatttcagttccagccttagataaaaaagagtctttgttttactttctgtgcgtgttagGGCCTCGGGAAGCACAATATCATCTGCATTGAGGACCTTGTCCACGAGATCATGACGGTCGGCCCGCACTTCAAGGAGGCCAACAACTTCCTCTGGCCGT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G02270.1 (Glycine max), 3'ss of exon 6
gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
|| ||  |    ||     ||||  ||    ||      |  || |||| ||   | | || || |||||    ||||| ||||| |||| |||| ||| || || | ||  |||||||| || ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||
gtattgtttattttacaattcttccttacagattttaattaattcgctacat---gcttcttacttgcttg---gatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCAT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G18170.1 (Glycine max), 3'ss of exon 6
---------gttt-ttatgtcattctgtatcttggttttctatgagcgattgtttg-----ctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
         || | || |||  | || | |      || |  ||   | |||||        ||  | || |  || || |    ||   |||  || |||||||||||  ||| || |||||| | |||||||| || |||||||||||||||||||||||||| || |||||||||||||| || || ||||| |
gtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtttgttctattacttagtttttttccctgacataacatt-caatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 6
-----gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
     |||  | |   |||||||||      |||  || |       ||  ||| ||   | | || || |||||    ||||| ||||  |||| || | ||| || |||| ||  |||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||
gtattgttaatttacaattctgtattacaaatttgaattaa------ttcactacat---gcttctgacttgcttg---gatgacagGCGCTGGGCAAATATGGAATCATTTCCACTGAAGATCTGATCCATGAGATCATCACTGTTGGGCCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCAT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G06860.1 (Glycine max), 3'ss of exon 6
----------------gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
                |  |     || ||   |||||   ||   | |  |   |   || ||   | || | ||| || |    ||   |||  || |||||||||||  ||| || |||||| | |||||||| || ||||||||  ||||||||||||||||||| |||||||||||||| || || ||||| |
gtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtttgt--tctattactcagttttttcgctgacataacatt-caatgccagACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATATTGACTGTTGGACCTCATTTCAAGGAGGCCAACAATTTTCTGTGGCCTT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G01250.2 (Arabidopsis thaliana), 3'ss of exon 6
gtttt---tatgtcattctgta--tcttggttttctatgagcgattgtttgctatatcttg---ttgctaac-ctgcttttgtgatga--------tagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT-------------------------------------------------------------------------------
||||    | ||||  |||||   ||||| || | ||     | |    |   |  | |     |  | ||  || |||   |    |         ||||| | || |||  |||||| |||||||  || ||| | || || |||||  | || || ||||||||||| ||||| |||||||||||||| |||||||                                                                               
gtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcaggctcttggaaagcatggtatcatttgcactgaggatttgatccacgagattctaacagtaggacctcatttcaaggaagCCAACAACTTCCTTTGGCCATTCCAGCTTAAGGCACCACTAGGTGGCCTCAAGAAGAAGAGAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGA

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 6
gtttt---tatgtcattctgta--tcttggttttctatgagcgattgtttgctatatcttg---ttgctaac-ctgcttttgtgatga--------tagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
||||    | ||||  |||||   ||||| || | ||     | |    |   |  | |     |  | ||  || |||   |    |         ||||| | || |||  |||||| |||||||  || ||| | || || |||||  | || || ||||||||||| ||||| |||||||||||||| |||||||
gtttgagatctgtctctctgtggctcttgcttctttagttttgttctgatatcaagtttaagactcacgaattcttcttccatacaaaaccaaaatcagGCTCTTGGAAAGCATGGTATCATTTGCACTGAGGATTTGATCCACGAGATTCTAACAGTAGGACCTCATTTCAAGGAAGCCAACAACTTCCTTTGGCCAT

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S2_667V6.2 (Physcomitrella patens), 3'ss of exon 4
----------------gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttg--ttgctaacctgcttttgtgatg-atagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
                 ||   |    |||     |  | |      | | |  ||  |||||  |   ||    || | |  |   ||  |  ||  |||||  | || ||||| ||||| || || || || ||||| |||||||||||| | |||||||||||||| || ||||| |||||||||||  ||||| | |
tcgtataaatagctgcattgcgacacaattaaaattagtaggacctgacgtgt-atcctttgcagtgatttcacctgatgaattctgttgattttgtgtagGCACTTGGAAAGTTGGGTATCATATGTATTGAGGATCTCATTCATGAGATCTTCACTGTTGGACCTCACTTCAAGGAAGCCAACAACTTTTTATGGTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719010|gb|FC067630.1|FC067630
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|33408299|gb|CF213926.1|CF213926
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|351030969|gb|FQ439005.1|FQ439005
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110427908|gb|EC994363.1|EC994363
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110362548|gb|EC926091.1|EC926091
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|77588453|gb|DV223438.1|DV223438
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110686521|gb|EE064257.1|EE064257
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|71870639|gb|DT019694.1|DT019694
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|33408211|gb|CF213838.1|CF213838
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|71873389|gb|DT022444.1|DT022444
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|34362333|gb|CF403918.1|CF403918
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110362206|gb|EC925723.1|EC925723
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110360464|gb|EC923584.1|EC923584
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|161716946|gb|FC068826.1|FC068826
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110364696|gb|EC928138.1|EC928138
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|71873570|gb|DT022625.1|DT022625
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|161719477|gb|FC067687.1|FC067687
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|71873637|gb|DT022692.1|DT022692
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110387232|gb|EC951884.1|EC951884
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAG                         GCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|161714799|gb|FC063247.1|FC063247
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC
EST: gi|110365131|gb|EC928904.1|EC928904
EST:     AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTCGAACAG                         GCTTTGGGGAAGTTTGGTATCATTTGCATGGAAGATCTTATTCATGAGATC
genomic: AGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgt ... gtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT
                              tgctaac  putative branch site (score: 1)
                                        cttttgt  putative PPT
                    tatatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatagGCTTTGGGGAAGTTTGGTATTATTTGCATGGAAGATCTTATTCATGAGATCATGACTGTTGGACCTCATTTTAAGGAGGCCAACAACTTCCTATGGCCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG