Sequence
atgc intronic sequence ATGC exonic sequencegtttttgaaattgatccccattgatctgcatctgctctgtttctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G23840.1 (Glycine max), 3'ss of exon 6
------------------------------------------------------------------------------gtttttgaaattgatccccattgatctgcatctgctctgttt-----ctgtcgagttcctaaaac----tgacctaatattcacttgctaaatcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTA
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gtatgatattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatat--tgtgcagTTCTATTTAGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTACTTGTCAAGGAATTTGCAACGAATTGTCAATGAGATCATAACAAAAGCGA
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G00570.2 (Glycine max), 3'ss of exon 7
------------gtttttgaaattgatccccattgatctgcatctgctctgttt--ctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTA
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cagtgtaataatgattttg---ctgatgcaaattttacttggttgacccttgtgaactgcaaagttcatca---tgaccatataataattttcttacat-tgtgcagTTCTATTTGGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTACTTGTCTAGGAATTTGCAACGAATTGTCAATGAGATTATAACAAAAGCAA
upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G49830.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttttgaaattgatccc-cattgatctgcatctgctctgtttctgtcgagttcctaaaactgacctaata-ttcacttgctaaatcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTA
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gtttgtacactcattcttgcttctgtatatgtatattcagcgagcatcgaaattgttgtgtacctttgttaacaaacaacctgcatctgtcacagCTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTACCTATCGAGGAATTTGCACAGGGGAACTAATGAGATAATATCTAAAGCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110700119|gb|EE077795.1|EE077795EST: ATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAG TTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTAC
genomic: ATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgtttttgaaa ... tcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTA
tgctaaa putative branch site (score: 2)
taatattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttttgaaattgatccccattgatctgcatctgctctgtttctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtagTTCTATTTGGACATGAAGTTCGTCATCTGCTTTGCTTCACAAGGTCGCTACTTATCACGGAATTTGAACCGAGTGGTCAATGAGATCATATCTAAAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA