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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatcatcataacttttgttgttaaagtgaactctgtcacatttatatcatcctgatgtggtaaggttaacatcgaaatgggattccctttggacagGCAGCTGCCTTGGTGAACTCAGGATTATTGCTTATGGCTGTTATGGGTTTAATGTTTCCAGCGGTGCTTCACTTCACACACACAGAGGTGCACTTTGGGA

Basic information

species Vitis vinifera
transcript Vv09s0018g01840.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161707664|gb|FC056043.1|FC056043
EST:     TCTTCACTGGCGGGATAAAAAATCACACAAAAGTTCAGGAGTTCAATAAG                         GCAGCTGCCTTGGTGAACTCAGGATTATTGCTTATGGCTGTTATGGGTTTA
genomic: TCTTCACTGGCGGGATAAAAAATCACACAAAAGTTCAGGAGTTCAATAAGgtagatcatc ... ctttggacagGCAGCTGCCTTGGTGAACTCAGGATTATTGCTTATGGCTGTTATGGGTTTA
EST: gi|161721025|gb|FC069979.1|FC069979
EST:     TCTTCACTGGCGGGATAAAAAATCACACAAAAGTTCAGGAGTTCAATAAG                         GCAGCTGCCTTGGTGAACTCAGGATTATTGCTTATGGCTGTTATGGGTTTA
genomic: TCTTCACTGGCGGGATAAAAAATCACACAAAAGTTCAGGAGTTCAATAAGgtagatcatc ... ctttggacagGCAGCTGCCTTGGTGAACTCAGGATTATTGCTTATGGCTGTTATGGGTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatcatcctgatgtggtaaggttaacatcgaaatgggattccctttggacagGCAGCTGCCTTGGTGAACTCAGGATTATTGCTTATGGCTGTTATGGGTTTAATGTTTCCAGCGGTGCTTCACTTCACACACACAGAGGTGCACTTTGGGA
                      ggttaac  putative branch site (score: 3)
                                         ttcccttt  putative PPT
                        ttaacat  TA-rich tract