1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttgataataaatcagaactcatcttgccttttttcttaaatacataattccttctcctgacaaacatccacttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCTACAAACTGCAGTTTCAAGTTCCCAAGGCTTGGCGAAACAAACCAATTGA
species | Vitis vinifera |
transcript | Vv09s0002g06980.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|110377543|gb|EC942616.1|EC942616
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|26256962|gb|CA808025.1|CA808025
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGACCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|32249446|gb|CD715265.1|CD715265
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|32249285|gb|CD715104.1|CD715104
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|110363813|gb|EC927432.1|EC927432
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|28961921|gb|CB340979.1|CB340979
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|27579355|gb|CB002050.1|CB002050
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|110385730|gb|EC950281.1|EC950281
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|32269789|gb|CD718948.1|CD718948
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGCCCCTEST: gi|110371008|gb|EC934697.1|EC934697
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
EST: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATG CTGTAAACTTAATCTTTTCATTCACAAACGGAACTGAGTGGGATGGCCCCT
genomic: AAAAGCTGATCGTCCCATATATACTATCCAGATATGCATTCCTAAGCATGgttgataata ... cttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCT
gccttttttcttaaatacataattccttctcctgacaaacatccacttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCTACAAACTGCAGTTTCAAGTTCCCAAGGCTTGGCGAAACAAACCAATTGA
tcctgac putative branch site (score: 2)
tccacttttc putative PPT
ttttcttaaatacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgataataaatcagaactcatcttgccttttttcttaaatacataattccttctcctgacaaacatccacttttcacagCTGTAAACTTAATCTTCTCATTCACAAACGGAACTGAGTGGGATGGTCCCTACAAACTGCAGTTTCAAGTTCCCAAGGCTTGGCGAAACAAACCAATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG