1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagatctaaagttaaattcttctatttcctgaaaattttggcactaaaagtaaatataatgcagGTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCATCATGTAAAGAG
species | Vitis vinifera |
transcript | Vv09s0002g06120.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGATAGGGCTGCAGATGAAGGGTTGATGATACTTCAGTCTCCAAAG GTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCAEST: gi|30303221|gb|CB980015.1|CB980015
genomic: TGCTTGATAGGGCTGCAGATGAAGGGTTGATGATACTTCAGTCTCCAAAGgtgagatcta ... tataatgcagGTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCA
EST: TGCTTGATAGGGCTGCAGATGAAGGGTTGATGATACTTCAGTCTCCAAAG GTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCAEST: gi|110700778|gb|EE077729.1|EE077729
genomic: TGCTTGATAGGGCTGCAGATGAAGGGTTGATGATACTTCAGTCTCCAAAGgtgagatcta ... tataatgcagGTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCA
EST: TGCTTGATAGGGCTGCAGATGAAGGGTTGATGATACTTCAGTCTCCAAAG GTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCAEST: gi|110693215|gb|EE069249.1|EE069249
genomic: TGCTTGATAGGGCTGCAGATGAAGGGTTGATGATACTTCAGTCTCCAAAGgtgagatcta ... tataatgcagGTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCA
EST: TGCTTGATAGGGCTGCAGATGAAGGGTTGATGATACTTCAGTCTCCAAAG GTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGG-AAGCGTGCACCTCCA
genomic: TGCTTGATAGGGCTGCAGATGAAGGGTTGATGATACTTCAGTCTCCAAAGgtgagatcta ... tataatgcagGTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCA
agttaaattcttctatttcctgaaaattttggcactaaaagtaaatataatgcagGTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCATCATGTAAAGAG
cactaaa putative branch site (score: 2)
actaaaagtaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatctaaagttaaattcttctatttcctgaaaattttggcactaaaagtaaatataatgcagGTTGGGTTTTTTAGGAGATCTCGGACGATAAAGGGGAAGCGTGCACCTCCATCATGTAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC