Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactagtgtcacaaggctgtatttaacactgtacagtaaaaatacccagctttttaactttagtgagaaatttcctaattatttcattcatgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGATCATCATCATCACTGATTGCTGCTTTTGCCATTTTCATACCGGAATAAAA

Basic information

species Vitis vinifera
transcript Vv09s0002g06000.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32457569|gb|CD798743.1|CD798743
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110383499|gb|EC947874.1|EC947874
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|71869211|gb|DT018266.1|DT018266
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110710069|gb|EE086082.1|EE086082
EST:     TGGANAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGAAGGAACACCACCACATTGGGGA-GGTGATGA
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGG-ATGGTGATGA
EST: gi|110416472|gb|EC982456.1|EC982456
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110372596|gb|EC936778.1|EC936778
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|77583916|gb|DV220998.1|DV220998
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|46911154|gb|CN546529.1|CN546529
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110729376|gb|EE105272.1|EE105272
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|30130611|gb|CB915950.1|CB915950
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGA
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGA
EST: gi|110418054|gb|EC984166.1|EC984166
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110409652|gb|EC975320.1|EC975320
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110391356|gb|EC956324.1|EC956324
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCCCCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110702032|gb|EE080284.1|EE080284
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110732279|gb|EE107427.1|EE107427
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGGATG-TGATGA
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGG-ATGGTGATGA
EST: gi|110363963|gb|EC927598.1|EC927598
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|34363406|gb|CF404991.1|CF404991
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110388157|gb|EC952876.1|EC952876
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|22015288|gb|BQ800322.1|BQ800322
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110379671|gb|EC944884.1|EC944884
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|32457413|gb|CD798587.1|CD798587
EST:     TGGAGAAAGGCAAGTCCCATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|351023328|gb|FQ432711.1|FQ432711
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110358977|gb|EC919699.1|EC919699
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|34416754|gb|CF415508.1|CF415508
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110388522|gb|EC953282.1|EC953282
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|18458128|gb|BM436406.1|BM436406
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110688079|gb|EE066223.1|EE066223
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATANGCCCAGGAAGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|71890751|gb|DT039806.1|DT039806
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110720795|gb|EE097031.1|EE097031
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110686825|gb|EE064905.1|EE064905
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110699246|gb|EE076077.1|EE076077
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|22011533|gb|BQ796567.1|BQ796567
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|351021701|gb|FQ437086.1|FQ437086
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110726657|gb|EE102629.1|EE102629
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATANGCCCAGGAAGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|22011530|gb|BQ796564.1|BQ796564
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110697767|gb|EE075131.1|EE075131
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110419881|gb|EC986135.1|EC986135
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110689245|gb|EE065301.1|EE065301
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATANGCCCAGGAGGAACACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110383239|gb|EC947598.1|EC947598
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|351028470|gb|FQ444751.1|FQ444751
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110383358|gb|EC947726.1|EC947726
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|30137046|gb|CB922384.1|CB922384
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|351015867|gb|FQ431822.1|FQ431822
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110705917|gb|EE083315.1|EE083315
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110704719|gb|EE081713.1|EE081713
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110417183|gb|EC983218.1|EC983218
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|46919594|gb|CN548923.1|CN548923
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110687315|gb|EE064616.1|EE064616
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110715813|gb|EE094294.1|EE094294
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|71890518|gb|DT039573.1|DT039573
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110372495|gb|EC936667.1|EC936667
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110384407|gb|EC948841.1|EC948841
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|22015168|gb|BQ800202.1|BQ800202
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
EST: gi|110377523|gb|EC942592.1|EC942592
EST:     TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACG                         CTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT
genomic: TGGAGAAAGGCAAGTCACATGAATGCCCTGTGTGCTCACAGTATTTCACGgtaagttgag ... tgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagctttttaactttagtgagaaatttcctaattatttcattcatgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGATCATCATCATCACTGATTGCTGCTTTTGCCATTTTCATACCGGAATAAAA
                           tcctaat  putative branch site (score: 2)
                      aaatttcctaattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aactagtgtcacaaggctgtatttaacactgtacagtaaaaatacccagctttttaactttagtgagaaatttcctaattatttcattcatgtttcacagCTGGAAGTCATAGGCCCAGGAGGACCACCACCACATTGGGATGGTGATGATCATCATCATCACTGATTGCTGCTTTTGCCATTTTCATACCGGAATAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - tcacaag
- - - - - - - - - - - - - cactgta
- - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - -ccagctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaatt