Sequence
atgc intronic sequence ATGC exonic sequence...ccaaagcagtttgatagttggattttagtaaataaagatgacatgctctttctttttaggttttgggttggttgtttactcttgctttatttgttattagTGGTGCAAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G01580.2 (Glycine max), 3'ss of exon 5
ccaaagcagtttgatagttggattttagtaaataaagatgac-atgctctttctttttaggttttgggttggttgtttactcttgctttatttgttattagTGGTGCAAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTA
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ttggatcatgctaggaaccaggcttcagtattggtagttatccaaatggcataattttattttgatagtttgttgtactgaccattttaatatgaaac-agTGCATCAAAGGCTATTGAAATTCTGGAAGCGTATGAAGGGACATTGGAAGATGATTATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTG
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G43760.1 (Glycine max), 3'ss of exon 5
ccaaagcagtttgatagttggattttagtaaataaagatgacatgctctttctttttaggttttgggttggttgtttactcttgctttatttgttat----tagTGGTGCAAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTA
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----atcatgctagtacccaggcttcactattgatagtagttgttattcaaatggcataattttattttgatagtttgttgtactgacttttaatatgaaacagTGCATCAAAGGCTATTGAAATTCTGGAAGCGTATGAAGGGACATTGGAAGATGATTATCCTCCAGAAAATGAATGGTGTGAGCATGGGGAAATGCTTTTG
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G22180.1 (Glycine max), 3'ss of exon 5
ccaaagcagtttgatagttggattttagtaaataaagatgacatgctctttctttttaggttttgggttggttgtt-tactcttgctttatttgt-tattagTGGTGCAAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTA
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--caagcattactcttgttttgctattataaatgaatgctgttgaaatcataatttcgttcttttgtttgtttgtaatacctaccttttgaatgtgtaccagTGCATCCAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGAAGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTA
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G03850.1 (Glycine max), 3'ss of exon 5
ccaaagcagtttgatagttggattttagtaaataaa-gatgacatgctctt-tctttttaggttttgggttggttgtt-tactcttgctttatttgt-tattagTGGTGCAAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTA
|||| | | ||| | | ||||| | | ||| | | | ||| ||| ||||| |||| ||| | ||| ||| || ||| |||||| ||||||| | ||||||||||||||||| || || || ||| ||||||||||||||||||| || |||||||||||||||||||||
----agcattactcttgttttgctattataaatggatgctgatgaaatatcataatttcgttcttttggttgtttgtaatacctatcttttgaatgtgtaccagTTCATTCAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGATGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctttctttttaggttttgggttggttgtttactcttgctttatttgttattagTGGTGCAAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTA
ctcttgctttattt CT-rich tract
tttatttgttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccaaagcagtttgatagttggattttagtaaataaagatgacatgctctttctttttaggttttgggttggttgtttactcttgctttatttgttattagTGGTGCAAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTA
-caaagca
- - - - - - - tagttgg
- - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttgc