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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA

Basic information

species Vitis vinifera
transcript Vv09s0002g04810.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 3'ss of exon 5
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaag-gttattacatgtttcaatttta--cattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
                                                                ||  || | ||  |  || |||| |  |    | |||  ||| || | | | ||  |||   |||| ||||| ||||| | || |||||  |||| || |||||||| |||||||| || || |||||||| || ||||| |||||||| || || ||||||||||| ||
--------------------------------------------------------------gtatgctttcccacctcatcgcttacttctgtttgatataccatcttgctaatataatcatccccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCGACGATATGTTCATACGTGTGTACAATTACAATACGATGGATAAGGTCAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 5
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
                                           || | | |  | | |   | ||  |  | | ||  ||| || ||  |||    ||  | |    ||  || | |  |||  ||| ||||  ||||||| || |||||  |||| || ||||||||||| ||||| || || |||||||| |||||||| ||||| || ||||| ||||| || |||||
-------------------------------------------gt-actcatctgcttatgttcacatgaaatgaaaatctgtcatagaggttgaattgatgctaacttgtatctgatctta--atttcagTGCGGTCAGCAAAATTTATTTCACGGAAACAATGGGTTGTAGCTGGTGCAGACGATATGTTCATTCGTGTCTACAACTACAACACGATGGACAAAGTTAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G124886_T04 (Zea mays), 3'ss of exon 5
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggtt-attacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
                                                     |    | | |||  |||   |  | |   |||| |  || ||||| | | |||| |  ||| ||  || |  ||| ||||| | || || || ||||| ||||| |||||||||||||||||||| || ||||||||||| || ||||| ||||| |||||||||||||| ||||| ||
----------------------------------------------------gtatgctcacccaacttt---ctgtgtgcttcttgtccgtgaggtttacttcatgct--aatattcaataacaatttcagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGATGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G141587_T01 (Zea mays), 3'ss of exon 5
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
                                                    |   |   | | |||||        ||||||    || |   | |||   |||| |   || || ||| |  ||| ||||| | || || || ||||| ||||| |||||||||||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| ||||| ||
---------------------------------------------------gtatgcacaaccaattttctgcttgcttctcttcccttag---gtttacatcatgct--gatattccataacaatttcagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGACGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 6
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
                  |  || |    |  ||| |    |     |   | |  ||  |    | | ||  || ||    | || |  | ||   |  | |||||  | || |||       ||||||||| | || || || ||||| ||||  |||||||||||||||||||| || ||||| ||||| || ||||| || || ||||| || ||||||||||| ||
------------------tgagtctaagaagactcaaacaagcccatt---actgtctacagttttctgtatgcatttgtgtttttgt--gcaattatgct-catgtaaccatgtta-------attgcagTTCGTTCGGCTAAATTTATTGCACAGAAGCAATGGGTTGTTGCTGGTGCCGATGACATGTTCATCCGTGTGTATAACTATAATACCATGGATAAGGTCAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 5
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatg---tttca-attttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
||  ||  | ||  ||||     || ||| || ||      || |   ||    | |||||| |||||   ||  || ||  | |  ||  | |  | ||| ||||   | ||| ||    ||| ||  |||||||||||||||| |||||||| |||||||| || ||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||| |||||
gtgggtggacgttttttagtctatttcat-tgatc------gtatatctg---cctcttgattcattt--gcttgatgtcattttctttctttatat-atttcatggggtctcatatgcagcatgatt-ttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 5
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatt-tctctcttattggtaaggttattacatgtttcaattttacattatcatt--gcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
||  ||  | ||  | ||     || |||  | |       ||||   ||    |  ||||| |||||      | |  | | | || || |||    |||| ||||  ||   | ||||  || |||  |||||||||||||| |||||||| |||||||| || ||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||| |||||
gtgggtgaacgttttatagtctatttcattggtt-------gtgtatctg---ccttttgattcatttgcttgaagtcattttttttctttgta----tatttcatgggtctcatatacagcatgattttgcagTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
--gtatgta--catgtactttatctgtttc---catatg-ctctatttggtgtgattgaattcccttgatccatttttactca---atttc----tctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
    ||| |  |||| || || |||| | |     | || || ||| |    ||||  | || | |  |  || ||||  |     |||||    | ||||| |   |||   | |  | | |   ||   |||| ||  |||||||||| || || |||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||
gtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaa-gctcttatacaacatgatt-ttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
----------gtatgtacat---gtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttc----tctcttattggtaaggttattacatgttt----caattttacattatcat--tgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
             || || |    |  |  || |||||  ||||   |   ||| ||   |||  |         |  || ||  |  |||||    | ||||| |   ||| | | |  |  | |    ||| | ||||  || ||  ||||||||| || || |||||||| |||||||| || ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || ||
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
         | |||    | ||||    | ||   | | |  | |  || || |   ||| |  || |       | |  | |||  || || |  |||||     |||  || |||   |  | |||||||| ||||||| |||||| ||||||| |||||||||||||| || |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||
--------gtatacggcttttgttcttttgtgtcttttgttatattgttcaagttt-ttgttgtatgtactaagtactcgtgtctagtttgttac-ttattctgcttttttatatta---tgactttgcagTTCGGTCAGCCAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTGATGATATGTATATCCGTGTATACAATTACAACACCATGGACAAGGTTAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaat-ttctctcttattggtaaggttattacatgtttcaattttacattatcattg--cagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
                                                          ||||  ||     |||| | |||  |||||||  |  |   || |  ||||  |  | |    |    |||  ||||| ||||||| ||||| || ||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||| || ||||| ||||||||| | ||
-------------------------------------------------------gtatgatatatagcatctcattgttccttcttattctttcgcacatcatttgttgaatctctgtcctggtgttgtgcagTTCGGTCAGCAAAGTTCATTGCACGGAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTGTCTACAACTACAACACTATGGATAAGATCAA

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 5
gtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
    ||| |   | |||||  |  ||  | || | |  ||| | |   |   ||| |||| |  || ||  ||    |  ||| |   ||      ||| |  |      | || || || |   ||||||||||||| || ||||||||  | ||||||||||||||||| |||||||| ||||||||||  || |||||||||||||| || |||||||| ||||| ||
----gtataacaagtttatgagcatct-tctgatttcattgttatagattt-ttcacttgctgtatattgccttgtatagtctgtcgctg------ttactgaa------atttatatatgact-ttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGGATGATATGTACATCCGTGTATACAATTACAATACAATGGACAAGGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
                    ttattacatgtttcaa  TA-rich tract