1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgtttctatcctattggctaagacagaattacagcatttgtaaccttcacctactgatatctacacatgattatcttctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTACTGCTAAACTGCAGGAGGTAGAAGATTGGTTGTATGAAGACGGTGAGG
species | Vitis vinifera |
transcript | Vv09s0002g04680.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGACAAGAAGAATGCCCTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAEST: gi|349825219|gb|FQ417940.1|FQ417940
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAA
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCANGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|71856570|gb|DT005625.1|DT005625
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|351056576|gb|FQ442404.1|FQ442404
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAEST: gi|71857129|gb|DT006184.1|DT006184
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCA
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|32245466|gb|CD711285.1|CD711285
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: GTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|349830554|gb|FQ416852.1|FQ416852
genomic: GTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAAGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|351022620|gb|FQ447142.1|FQ447142
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAEST: gi|351045993|gb|FQ441376.1|FQ441376
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGA
EST: A-GACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGATTTTEST: gi|110721835|gb|EE097540.1|EE097540
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|351031000|gb|FQ439036.1|FQ439036
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|110364620|gb|EC928007.1|EC928007
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|110699605|gb|EE076751.1|EE076751
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|351026310|gb|FQ428322.1|FQ428322
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCANGACTTTGTCACTTCATCAGAGEST: gi|351044463|gb|FQ442994.1|FQ442994
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAG
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGEST: gi|351016635|gb|FQ424062.1|FQ424062
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATG
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTEST: gi|71856214|gb|DT005269.1|DT005269
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
EST: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAG CTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
genomic: AAGACAAGAAGAATGCCGTGGAGGCATATGTTTATGACATGAGAAACAAGgtaagtgttt ... tctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTT
cagcatttgtaaccttcacctactgatatctacacatgattatcttctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTACTGCTAAACTGCAGGAGGTAGAAGATTGGTTGTATGAAGACGGTGAGG
tactgat putative branch site (score: 2)
ttatcttctgcccc putative PPT
atgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtttctatcctattggctaagacagaattacagcatttgtaaccttcacctactgatatctacacatgattatcttctgccccagCTTCATGACAAGTATCAGGACTTTGTCACTTCATCAGAGAGGGATGAGTTTACTGCTAAACTGCAGGAGGTAGAAGATTGGTTGTATGAAGACGGTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA