Sequence
atgc intronic sequence ATGC exonic sequencegttaactccctattttttaagctattggggtaactgccctcccttttactgttgtatttcttctgatgtcatcttatggatgcagATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G01880.1 (Glycine max), 3'ss of exon 5
---gttaactccctattttttaagctattggggt------aactgccctcccttttactgttgtatttct--tctgatgtcatcttatggatgcagATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATA
|| | | || ||| ||| ||| ||| ||| | | | | | || | ||| || | | | |||||||||||| || |||| || || |||| ||| || |||||||||||||||||||| || |||||||| |||||||| ||| || | ||| |
gtgattgattagttactttggcctacatttgggacttacaaaccattttcctgcatcttttagaacttttggtctaattcttttgtttaaatgcagATAATGTTTATATATGTGGATATTAATGATGAGAACCTTGCAAAGCCCTTCTTAACATTGTTTGGTCTTGAAGAATCAAAAAATACTGTG
upper sequence: Vv09s0002g04250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G43430.2 (Glycine max), 3'ss of exon 5
-------gttaactc--cctattttttaagctattggggtaactgccctcccttttactgttgtatttcttctgatgtcatcttatggatgcagATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATA
|||| | |||| ||| |||| | | | || | |||| | | | ||| || | | | | |||||||||||| || |||| || || |||| ||| || |||||||||||||||||||| || |||||||| ||||| || ||| || | ||| |
gtgattagttactttagcctacatttggagctttcaaaccattttcctgcattttt--tagaacttatggtctaattcctttgtttaaatgcagATAATGTTTATATATGTGGATATTAATGACGAGAACCTTGCAAAGCCCTTCTTAACATTGTTTGGTCTTGAGGAATCAAAAAATACTGTG
upper sequence: Vv09s0002g04250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G43430.1 (Glycine max), 3'ss of exon 5
-------gttaactc--cctattttttaagctattggggtaactgccctcccttttactgttgtatttcttctgatgtcatcttatggatgcagATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATA----
|||| | |||| ||| |||| | | | || | |||| | | | ||| || | | | | |||||||||||| || |||| || || |||| ||| || |||||||||||||||||||| || |||||||| ||||| || ||| || | ||| |
gtgattagttactttagcctacatttggagctttcaaaccattttcctgcattttt--tagaacttatggtctaattcctttgtttaaatgcagATAATGTTTATATATGTGGATATTAATGACGAGAACCTTGCAAAGCCCTTCTTAACATTGTTTGGTCTTGAGGAATCAAAAAATACTGTGGTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857296|gb|DT006351.1|DT006351EST: AGAATCTTCTTAATCTTCTACAGGATGTTGCAAGAAAGTTCGTTTCCAAG ATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTC
genomic: AGAATCTTCTTAAGCTTCTACAGGATGTTGCAAGAAAGTTCGTTTCCAAGgttaactccc ... atggatgcagATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taactgccctcccttttactgttgtatttcttctgatgtcatcttatggatgcagATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATA
ttctgat putative branch site (score: 3)
ttgtattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaactccctattttttaagctattggggtaactgccctcccttttactgttgtatttcttctgatgtcatcttatggatgcagATAATGATTGTATACGTTGACATTACTGAGGACAACCTTGCAAAGCCCTTCTTGACTTTGTTTGGGCTTGAAGACTCAGAAGACACTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA