Sequence
atgc intronic sequence ATGC exonic sequence...ccacttcaaaactatgtaatttgattcccttttgacttcactttagttttgtctttaacattttgatatggaattgaccttagtcttggcttaatttcagGTCCAGATCTTGACAGAAGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATATCCATAAAACCATATTTCGGATTTTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G21840.1 (Glycine max), 3'ss of exon 5
-------------------------------------------------------------------------------ccacttcaaaactatgtaatttgattcccttttgactt---cactttagt---tttgtctttaacattttgatatggaattgaccttagtcttggcttaatttcagGTCCAGATCTTGACAGAAGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATATCCATAAAACCATATTTCGGATTTTAA
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gtatgctctgtgattaactctagttacatttaatactttgattatcaaatcatgcacacacaaagtactgtttatgatgtaattttaatcaaatgcaatttaat-ccttgttgtctggagcaaggcagtccattcctattttgttattaattttgtattttttttaaatcttgtcttgatttaagGTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATC------------------------------
upper sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G02180.2 (Glycine max), 3'ss of exon 5
ccacttcaaaactatgtaatttgattcccttttgacttcactttagttttgtctttaacattttgatatggaattgacctt-agtcttggcttaatttcagGTCCAGATCTTGACAGAAGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATATCCATAAAACCATATTTCGGATTTTAA
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-taatcaaatgcaatttaatccttgttgagtggagcatggcagtccattcctatttggttattaattttgtatttgtttttgaatcttgtcttgattttagGTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC------------------------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttgtctttaacattttgatatggaattgaccttagtcttggcttaatttcagGTCCAGATCTTGACAGAAGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATATCCATAAAACCATATTTCGGATTTTAA
tttaacattttgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccacttcaaaactatgtaatttgattcccttttgacttcactttagttttgtctttaacattttgatatggaattgaccttagtcttggcttaatttcagGTCCAGATCTTGACAGAAGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATATCCATAAAACCATATTTCGGATTTTAA
ccacttc
- - - -aaaacta
- - - - - - - - - - - - - ccctttt
- - - - - - - - - - - - - - - - - acttcac