1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tacatggcacttgcaacactattattttgaatactttgcagtagttggacatgaattagtttataattcggtttgtgaacatgtgatgtgtcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC
species | Vitis vinifera |
transcript | Vv09s0002g03410.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTEST: gi|110418706|gb|EC984872.1|EC984872
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACT
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTEST: gi|30251350|gb|CB969083.1|CB969083
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACT
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAACCCGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTEST: gi|30251265|gb|CB968998.1|CB968998
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACT
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAACACGEST: gi|30251355|gb|CB969088.1|CB969088
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGAACACG
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAACCCGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTEST: gi|30251271|gb|CB969004.1|CB969004
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACT
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAEST: gi|161721537|gb|FC069747.1|FC069747
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGA
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTEST: gi|110386232|gb|EC950813.1|EC950813
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACT
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTEST: gi|156736126|gb|EV240247.1|EV240247
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACT
EST: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCA CATGTTCGTGAACACNGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAAAC
genomic: TACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCAgtaagcatct ... tcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAA-C
tggacatgaattagtttataattcggtttgtgaacatgtgatgtgtcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC
atgaattagtttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatggcacttgcaacactattattttgaatactttgcagtagttggacatgaattagtttataattcggtttgtgaacatgtgatgtgtcacatgcagCATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
-acatggc
- - - - - - gcaacac
- - - - - - - - - - - - - - - - - - tgcagta
- - - - - - - - - - - - - - - - - - - - - - - ggacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga