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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcaattctttagtttctattgtttacttatttgattctgatggtcagatgctatctttctttcttcttcatgattgtgatatgtaagtaaaatgttagtagggtttgaaatgaaatttatgattgagatgtataattgaagcacctctgatatcttgctgtagGTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAG

Basic information

species Vitis vinifera
transcript Vv09s0002g03390.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03390.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G21450.1 (Glycine max), 3'ss of exon 5
gttagcaattctttagtttctattgtttacttatttgattctgatggtcagatgctatctttctttcttcttcatgattgtgatatgtaagtaaaatgttagtagggtttgaaatgaaatttatgattgagatgtataattgaagcacctctgatatcttg-----ctgtagGTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAG
                                              || ||| | | |  |  | | ||| |  || ||||| | | ||     ||   | ||    | | |  ||| ||  |||||  ||||  |  | ||||||  || |||||| |       || |||| |||||||||||||||||| |||||  |||||||||| || |||||||| ||||||||| ||||| | |||  ||| ||||| | ||||||||| |||
----------------------------------------------gtgagaagttcttgtcttattttcctt-tggttgtg-tgtttagtcttaagaatggttacatattatttgatatgaatgat--agattaaatactgaagcttctttgatatatgagatgactctagGCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTAACTGAGTATGACTGTGCATTAGATGCTGAGAGTTTCAGCCCTGGTGATCAG

upper sequence: Vv09s0002g03390.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G01790.1 (Glycine max), 3'ss of exon 8
gttagcaattctttagtttctattgtttacttatttgattctgatggtcagatgctatctttctttcttcttcatgattgtgatatgtaagtaaaatgttagtagggtttgaaatgaaatttatgattgagatgtataattgaagcacctctgatatcttg-----ctgtagGTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAG
                                            ||  ||  |  | ||||  |||| | |   ||| |      | | |  |||   |   ||   ||||| |||||     ||||  ||||  |  ||||||||  || |||||| |       || |||| |||||||||||||||||| |||||  |||||||||| || ||||| || ||||||||  ||||| | |||   || |||||||| ||| |||| |||
-------------------------------------------gtgagcaattcttgtcttattttcctttgattgagtccttagtcttaacaaaggttacatattatttgatatgaa-----tgat--agattaaatattgaagcttctttgatatatgatatgactctagGCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTGACTGAGTATGATTGTGCATTAGATGCCGAGAGTTTAAATCCTAGTGATCAG

upper sequence: Vv09s0002g03390.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S401_23V6.1 (Physcomitrella patens), 3'ss of exon 4
gttagcaattctttagtttctattgtttacttatttgattctgatggtcagatgctatctttctttcttcttcatgattgtgatatgtaagtaaaatgttagtagggtttgaa-atgaaatttatgattgagatgtataattgaagcacctctgatatcttgctgtagGTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAG
                                                                    |  ||  |  |  |||||| |  |  ||| |  |  ||||||||| ||  |     |           | || |||   |    |  |  | |   | |||| ||||| ||||||||||| |||||| ||||||||||| | ||    ||  |    ||      | ||||||  || ||  |  | || || ||| | 
------------------------------------------------------------------actgctctcgtgtaggatatg-acttggaatttcgggtgggtttgaatattgaccacgtacccttacataacaagtgatatatggttcctgacct-tggcagGTGATCAATATGGAGTGGGGAAACTTTTGGTCATCACATTTGCCTCGGACCTATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaaatttatgattgagatgtataattgaagcacctctgatatcttgctgtagGTTATCAACATGGAGTGGGGCAACTTTAGGTCATCACATCTACCATTAACAGAGTATGACCGTGCAATGGATATTGATAGTTTAAACCCTGGTGAACAG
                                    ctctgat  putative branch site (score: 4)
                                            tcttgct  CT-rich tract
     aatttatgatt  TA-rich tract