Sequence
atgc intronic sequence ATGC exonic sequencegtagataatggggttctactttacattctttgatctctcacttattctttgctactagacataaaaatctgataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G20770.1 (Glycine max), 3'ss of exon 6
gtagataatggggttctacttt-acattctttgatctctcacttattctttgctactagacataaaaatctgataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
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---------gtttaccaactttcatatttttctagttcccgtcccagcttag--atcacagctagaattttcttaatctttttttttcctc-----ctaaaagGGATATTATCAAGCCTCAGCAAGGGAATTAATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCCGAGACATCACTTGGTGTGGTTA
upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 6
gtagataatggggttctactttacattctttgatctctcacttattctttgctactagacataaaaatctgataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
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------gtttacgcacttcctagtttttcttggttttctattttttgtcc-ttgcttggttcataaagctaacaaacttttaatcatcttcct---tgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G01380.1 (Glycine max), 3'ss of exon 13
gtagataatggggttctactttac-attctttgatctctcacttattctttgctactagacataaaaatctgataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
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---------gtttaccaactttcttatttttctgtttcccgcccctgcttagatcacagagctagaactttcttaatc-------tttttttccccctaaaagGGATATTATCAAGCCTCATCAAGGGAATTAATGCGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGTGTGGTTA
upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G20360.1 (Glycine max), 3'ss of exon 6
----------------------------------------------------------------------------gtagataatggggttctactttacattctttgatctctcacttattctttgctactagacataaaaatctgataaccatcctgtt----ttcattctga----ctaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
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gtttaatttctttactttctaatttttatttgttagaatttatttccttataaaaatatttatacagaaaaccttaataaacagtaaa--tataattgttaactttccattctcggttcctaattagatcatggatctagcaacttcctagcctttgtattttattttgttttaaaattttaatagGGATATTATCAAGCCTCGGCGAGGGAATTGATAAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCTGCTGAGACATCACTTGGGGTGGTTA
upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 7
gtagataatggggttctactttacattctttgatctctcacttattctttgctactagacataaaaatctgataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
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--------------------gtaatttttttcctagccctgctcaaatgtagtaatgatcgttttgttattttacctgtgcttttttttttttggatgaa-gGGCTATTATCAAGCTTCTGCTAGAGAAATTATACGGATCAATGGAACTACTAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGTGCAGTTA
upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 3'ss of exon 6
gtagataatggggttctactttacattctttgatctctcacttattctttgctactagacataaaaatctg-ataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
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gtacatgattcgattctacttc-tgtttttag---------ttgttttatgc-----agcaaataagtctgtattaacatccgcttcttctttgaa--aaaagGATTACTATTTAGCCTCTGCAAGGGAGCTGATTAGGATCAATGGAACAACCAAAGCTCCAGTGATGAATTATGCTGCAGAAACCTCACTTGGGGTGGTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgctactagacataaaaatctgataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
ttctgac putative branch site (score: 2)
tcctgttttcattct CT-rich tract
ataaaaatctgataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagataatggggttctactttacattctttgatctctcacttattctttgctactagacataaaaatctgataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG