Sequence
atgc intronic sequence ATGC exonic sequencegtgagtaacactcactaacttatcttctgatatattatgatcaataggcttaacacaagttgatatggtttatggatacttgcaaaacatccagGATGGAAATACTTTGGACAGTGAGTTAGAAGTGGTGGAAGGAATGAAGCTAGCGAGAGGCTATATATCTCCTTATTTTGTTACTGACCACAAGACCCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02240.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G01190.1 (Glycine max), 3'ss of exon 5
gtgagtaacactcactaacttatcttctgatatattatgatcaataggcttaacacaagttgatatggtttatggatacttgcaaaacatccagGATGGAAATACTTTGGACAGTGAGTTAGAAGTGGTGGAAGGAATGAAGCTAGCGAGAGGCTATATATCTCCTTATTTTGTTACTGACCACAAGACCCAGA
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---------gtaagcaaatttgtccatttttgtgaacttattacacaacaaaatttcagtccagggtatctata---atcttaaaaactttcagGATGGGAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGA
upper sequence: Vv09s0002g02240.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G20560.2 (Glycine max), 3'ss of exon 4
gtgagtaacactcactaacttatcttctgatatattatgatcaataggcttaacacaagtt-gatatggtttatggatacttgcaaaacatccagGATGGAAATACTTTGGACAGTGAGTTAGAAGTGGTGGAAGGAATGAAGCTAGCGAGAGGCTATATATCTCCTTATTTTGTTACTGACCACAAGACCCAGA
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-------------gtaagcaaatttgtccattt-ttgtgaacttattacacaacaaagtttcagtccaggatatctataattttaaaactttcagGATGGGAACACTTTGGATAATGAATTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGATACATATCTCCTTATTTTATTACTGATCAGAAGACCCGGA
upper sequence: Vv09s0002g02240.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G13860.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagtaacactcactaacttatcttctgatatattatgatcaataggcttaacacaagttgatatggtttatg-gatacttgcaaaacatccagGATGGAAATACTTTGGACAGTGAGTTAGAAGTGGTGGAAGGAATGAAGCTAGCGAGAGGCTATATATCTCCTTATTTTGTTACTGACCACAAGACCCAGA
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---------gtaagcttacttttcttttcatgccttataatagatca-cttgatg---gttg-tctgatcgctgtgttattcttcaaatacccagGATGGTAACACTTTAGATAACGAGCTGGAAGTAGTGGAAGGAATGAAGCTAGCCAGAGGTTACATTTCTCCTTATTTTATCACGGATGAGAAGACCCAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcaataggcttaacacaagttgatatggtttatggatacttgcaaaacatccagGATGGAAATACTTTGGACAGTGAGTTAGAAGTGGTGGAAGGAATGAAGCTAGCGAGAGGCTATATATCTCCTTATTTTGTTACTGACCACAAGACCCAGA
ttgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtaacactcactaacttatcttctgatatattatgatcaataggcttaacacaagttgatatggtttatggatacttgcaaaacatccagGATGGAAATACTTTGGACAGTGAGTTAGAAGTGGTGGAAGGAATGAAGCTAGCGAGAGGCTATATATCTCCTTATTTTGTTACTGACCACAAGACCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG