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...atccaggtcatttaattgcaacctcgtggtctcgagctgtctgttttgtatatagaatctgatactgttattaacttttgtattgtttttcttttattagGGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCACCTTTGATGAGGAGATTTACACAACGAAACTTGACAGAGGTCCTCAAACG
species | Vitis vinifera |
transcript | Vv09s0002g01560.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTCAATGTCCTGAATTAGAAAAAACATTTGATGGTCCTTGGAAAAG GGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCACEST: gi|110698235|gb|EE075556.1|EE075556
genomic: ATTCCTCAATGTCCTGAATTAGAAAAAACATTTGATGGTCCTTGGAAAAGgttgttaccg ... cttttattagGGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCAC
EST: ATTCCTCAATGTCCTGAATTAGAAAAAACATTTGATGGTCCTTGGAAAAG GGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCACEST: gi|161710391|gb|FC059009.1|FC059009
genomic: ATTCCTCAATGTCCTGAATTAGAAAAAACATTTGATGGTCCTTGGAAAAGgttgttaccg ... cttttattagGGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCAC
EST: ATTCCTCAATGTCCTGAATTAGAAAAAACATTTGATGGTCCTTGGAAAAG GGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCAC
genomic: ATTCCTCAATGTCCTGAATTAGAAAAAACATTTGATGGTCCTTGGAAAAGgttgttaccg ... cttttattagGGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCAC
ttgtatatagaatctgatactgttattaacttttgtattgtttttcttttattagGGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCACCTTTGATGAGGAGATTTACACAACGAAACTTGACAGAGGTCCTCAAACG
tattaac putative branch site (score: 1)
cttttgtattgttttt CT-rich tract
tgttattaacttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccaggtcatttaattgcaacctcgtggtctcgagctgtctgttttgtatatagaatctgatactgttattaacttttgtattgtttttcttttattagGGGCTGGGATCAGTTTGAAATAAATAAAAAATTGTTTGGAGTAAACAGCACCTTTGATGAGGAGATTTACACAACGAAACTTGACAGAGGTCCTCAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- ccaggtc
- - - - - - - - - caacctc
- - - - - - - - - - - - - - - - - - -tgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatac