Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

Basic information

species Vitis vinifera
transcript Vv09s0002g01460.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
       |  | |||     |  | | | ||||| |  ||||||   ||   ||  |  |  |     |||||   ||        |||  |     ||||||||  ||||||| ||||| ||||| |||||||| |||||||| ||||||||||| || || |  || ||| |||| |||||||| ||||||||  |||
-----gtttgtacataaaatcc-atccg-tttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttcttgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
aatctcctattgcatggttcct--tacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
           |  |||| | |  || | | | | || | | | |   |    | ||  |         ||  | |   | | ||  ||||   |    ||||||||  | ||||||||||| ||||| ||||| ||||||||||| ||||||||||| || || |  |  ||| |||||||| | || || || |||   |
-----------gtttggtgcttggtatcagatgttatcttattatgcaaac-atataacaaaatagctgttagtaatactctagttgacttggctt---cagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
---------------------------------------------aatctcctattgcatggttcct-tacctgctt---tgatttcaatgttttagttgt-ctattacttcccaccttttttacttttttgtgaacttaattggcac--agGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                                ||| |     ||  ||| | || |   ||   | || |||   |||  ||  | || | | ||  |   | |   |||   | |   |  |   || |    |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||  || || || || ||| | ||||||||||| |  |
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------------aatctcctattgcatggttccttacctgctttgatttcaatg-----ttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                      ||||||     ||  |  | |||   ||||| ||||||       | |   |||    ||   |   |  | | |||    | | |    ||| ||    |||||||| ||||||||||| || ||||||||||| |||||||| || ||||||||||| || || |  || ||||| || ||| | ||||||||||| |  |
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatt-tctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcg--ttatttttttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------aatctcctattgcatggttccttacctgctttgatttcaatgttttagtt-gtctatta-cttcccaccttttttacttttttgtgaactta-attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                  || |    | ||  |  ||| | |  |  | |||||||| |      | | || |||||  ||   ||      |      || || |  ||  ||    ||||| || ||||| |||||||| || ||||||||||||||||| || ||||||||||| || ||||  || || || || ||| | || |||||||| |  |
gtattcttgacagctttttaatcttgttagtctcaaccgttcactgagt--ttcttcaattattgtgatttcattcggaaggctcgtttattagttttttactacgaatctcaggttttggatgtatgtttttgcagGGAGTGTTGGGCATCAAGGTTAAAATCATGCTTGACTGGGACCCGAAGGGCAAGCAAGGACCTATGACTCCCCTTCCAGATGTGGTTACCATCCATATGC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
-------------------------------------------------aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttg----tgaacttaa--------ttggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                                 |||      | |  || |||| | | ||| ||    | |||  ||   |  |  |    |    |     ||  || |  ||    |||| | ||        ||    ||||| || |||||||||||||| ||||||||||| |||||||||||||| ||||| || || || |  || || || || ||| | || ||||||||||  |
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S487_22V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------------------aatctcctattgcatggttccttacctgctttga-----tttcaatgttttagttgtctattacttcccacc----ttttttacttttttgtgaacttaattg--gcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                  | || |  |||  |   |||      |||  |     |||||   ||||| |  |  || | || | ||     | |   |||| |  ||   |||  ||   |  ||||| || |||||||||||||||||||| ||||| |||||||| ||||||| |||||| ||  ||   || |  || || ||| | || ||||| ||||  |
gcacgtgtggacattttttgtctaatggtggctgtttcttcatgctagagacctattacacttctacaacgtttcatgtttttaatgctacatcattttctacagaaatatgagacttgtcagttgtcttccttactgtgcagGGAGTATTGGGTATCAAGGTGAAGATTATGCTCGACTGGGACCCCAAGGTCAAGCAAGGATCTGTGACTCTACTTCCAGATGTGGTGACCATTCACATGC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------aatctcctattgcatggttccttacctgctttgatttc---aatgttttagttgtctattact--tcccacctttt------ttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                      | |  | ||  ||  |  || ||     | ||||||   |  ||||| | | | |||  ||  |||    | ||      ||||||||||    |||    | |  ||||| || ||||| |||||||| ||||||||||| |||||||| || ||||||||||| ||||| |  || ||||| || ||| | || || ||||| |  |
gtatgtggatcttcatagtgtttttggtcttcaattttctctgacgatgctagatttcgtcatcgtttttgctctatatacctaatccagtgtattgacgtgttacttttttaattactgttcttg-gcagGGAGTGTTGGGCATCAAGGTAAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGCCCCATGACCCCTCTTCCAGATGTGGTTACTATCCATATGC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
----------aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttactttt--ttgtgaacttaattggca------cagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
              |  | |      ||  ||    |    |  |   ||  | ||  |||    |   |   | |    |  |  |    | | | | |   |||| |      ||||| ||  |||| || ||||||||||||||||| ||||||||||| ||||| ||||| || || |  || || || || ||| | || || || ||||  |
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                   | |||    |   | || |  |  ||   | |   ||| ||      || | |    ||||  |||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||   || ||    ||||| || || ||  | || || |||||    |
----------------------------------gtgcaagaactcgatcgttt--tgatttggatccagttt-ctaagcattggattgtgctggc--agGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggc--acagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                   | |||    |   |  | |  |  ||   | |   ||| ||      || | |    ||||   ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||   || ||    ||||| || || ||  | || || |||||    |
----------------------------------gtacaagaactcgatcattt--tgatttggatccagttt-ctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                   | |||    |   | || |  |  ||   | |   ||| ||      || | |    ||||  |||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||   || ||    ||||| || || ||  | || || |||||    |
----------------------------------gtgcaagaactcgatcgttt--tgatttggatccagttt-ctaagcattggattgttctggc--agGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110373526|gb|EC937770.1|EC937770
EST:     GCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: GCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110362184|gb|EC925700.1|EC925700
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|77587480|gb|DV222899.1|DV222899
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110687019|gb|EE064061.1|EE064061
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110703210|gb|EE079857.1|EE079857
EST:     CTGTCAAAGAATATATCGACTCGGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|30126762|gb|CB912101.1|CB912101
EST:     CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110361538|gb|EC925020.1|EC925020
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|161721504|gb|FC070070.1|FC070070
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCC
EST: gi|110689519|gb|EE065813.1|EE065813
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|161713092|gb|FC064279.1|FC064279
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACT
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACT
EST: gi|110367587|gb|EC931527.1|EC931527
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|71872575|gb|DT021630.1|DT021630
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCA-GGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|33406072|gb|CF211699.1|CF211699
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110372712|gb|EC936899.1|EC936899
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110419119|gb|EC985321.1|EC985321
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|71872925|gb|DT021980.1|DT021980
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|352794640|gb|FQ475138.1|FQ475138
EST:     CTGTCAAAGAATATATCGACTCGGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|71869646|gb|DT018701.1|DT018701
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCC
EST: gi|77582925|gb|DV220460.1|DV220460
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110362746|gb|EC926298.1|EC926298
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110389189|gb|EC954008.1|EC954008
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110692357|gb|EE071507.1|EE071507
EST:     CTGTCAAAGAATATATCGACTCGGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|34548015|gb|CF516247.1|CF516247
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110698923|gb|EE076973.1|EE076973
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|161715927|gb|FC065510.1|FC065510
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCACGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110405776|gb|EC971326.1|EC971326
EST:     CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTTTTTGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|161713167|gb|FC064317.1|FC064317
EST:     CTGTCAAAGAATATATCGACTCAGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
EST: gi|110687222|gb|EE064445.1|EE064445
EST:     CTGTCAAAGAATATATCGACTCGGCCGTGAGGCATGTGCTCCTTAGACAG                         GGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC
genomic: CTGTCAAAGAATACATCGACTCGGCCGTGAGGCACGTGCTTCTTCGACAGgtcagaaaca ... attggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC
                                        acttaat  putative branch site (score: 4)
                      ttttttacttttttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttacttttttgtgaacttaattggcacagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

- tctccta
- - - - - -gcatggt
- - - - - - - - - - - - cctgctt
- - - - - - - - - - - - - - - - - - -caatgtt