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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgcctttaaaggcatgtacttcctcataatttttgtggtgaaaaaatttatttgtttaatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT

Basic information

species Vitis vinifera
transcript Vv09s0002g00170.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 3'ss of exon 5
-----gatgcctttaaaggcatgtacttcctcataatttttgtggtgaaaaaatttatttgtttaatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
      |||||||  |   ||| ||     |     |  ||||  |    |  | | ||     | |||  ||   | | |     || |   |    | ||||| |||||||| || || || |||||||||||||| ||||| || || ||||| |||||||| |||||||||||||| || || ||||| ||||||||||||
agtcatatgccttctatatcatatatagtttgtatgtcattgttct----aggtctgttgaaccactgtactcac-tgtataaattcatctcacgtttaatgcagTGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGACCCAAGTGTTACCATGATGACAGTTGAGGAAAAACCTGATGTGACATAT

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os06g09290.2 (Oryza sativa), 3'ss of exon 5
-----gatgcctttaaaggcatgtacttcctcataatttttgtggtgaaaaaatttatttgtttaatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
      ||   ||    |   || ||||     | ||  |  |  ||||  ||||   || |  | ||  || |  | | ||||| |    || |  |||  ||| ||||||||||| || || || ||||||||||| ||||| |||||||||||||| || || ||||||||||| || ||||| ||||| |||||||| || 
ttccacatatgttgtttgcattgcacttgt--gtgatgctgttcttgaagtaattatattatcaattggattgtattgtttctcatcc-tgtg-tatcat-acagAGTTGATCGAAACAAGTACCAAATTCAAATTCCTTTGCCACCAAAGATTGATCCCAGCGTTACCATGATGACTGTGGAAGAAAAACCAGATGTGACTTAC

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G181359_T01 (Zea mays), 3'ss of exon 5
gatgcctttaaaggcatgtacttcctcataatttttgtggtgaa----aaaatttatttgtttaatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
  | |  |||      ||  |    |  || ||||   |   ||    ||  |||       || ||    |||  |  ||||||    |||||    |||||| |||||||| || || || ||||||||||| ||  | || ||||| ||||| |||||||| ||||||||||| || || || || || |||||||| || 
--ttcggttatttctctgcgcgctgtgctatttttaccgaataagttgaaccttttcccacctagtgaaaactttgtgatctcacacgtatgct--tgttgcagTGTTGATCGCAACAAGTACCAGATTCAAATCCCTCTTCCACCAAAAATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTAC

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G110185_T01 (Zea mays), 3'ss of exon 5
-gatgcctttaaaggcatgtacttcctcataatttttg--tggtgaaaaaatttatttgtttaatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
   ||  | |     |||||  |     || |||   |  ||     ||   ||  |    || ||         || ||||||     |  ||   |||||| |||||||| || || || ||||||||||| ||  | || ||||| ||||| |||||||| ||||||||||| || || || || || |||||||| || 
ttttggttatttctccatgtgttgtgctattattcccgaatgagttgaactgtttctcacctagtgaaaaaactattatctcactggattcttg---ttgcagTGTTGATCGCAACAAGTACCAGATTCAAATCCCTCTCCCACCAAAAATTGACCCAAGTGTTACCATGATGACTGTGGAGGAAAAGCCAGATGTGACGTAC

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G05220.1 (Glycine max), 3'ss of exon 5
-gatgccttta--aaggcatgtacttc-----ctcataatttttgt--ggtgaaaaaatttatttgtttaatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
  ||||||  |  |||  || |  | |        ||||   | |   |  ||  || | |||    ||  ||| | ||||||||| | |||  |||  |  ||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| || |||||||| || ||||| ||||||
gtatgcctccaataagtaatttgatgctagaatgtataaccatagaaagaagaggaactctatggccttgttgtatgcttgtttgtttgaccttcattttatcattgcagGGTTGATAGAAATAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACTGTTGAAGAGAAGCCAGATGTAACATAT

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G01810.1 (Glycine max), 3'ss of exon 5
-gatgcctttaaaggcatgtacttcctcataatttttgtggtgaaaaaatttatttgtttaatgtgtt-cttgtttgt---ctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
  |||  |  ||       |        | ||| ||| | |  | || |   |    ||     ||||   || ||||    | |||  |||  |  ||||||||||||||| |||| |||||||||||||| ||||| ||||| || || |||||||||||||||||||||||||| || |||||||| || ||||||||||||
gtatgtttccaataagtaatttgatgcaagaatatttatagaaagaagaggaaccctttgggcatgttgtctgcttgtaatttgaccttcattttatcattgcagGGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCGAAAATTGATCCAAGTGTAACCATGATGACGGTTGAAGAGAAGCCAGATGTGACATAT

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G42370.2 (Glycine max), 3'ss of exon 5
-------------gatgcctttaaaggcatgtacttcctcataatttttgtggtgaaaaaatttatttgtt-taatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
               |  ||||  | |  |  | |    |||  |    |  |       |||    |||| |  ||| | ||||| || || | |  ||| |   |||| |||||||||| |||| ||||||||||||||||||||  |||| ||||| ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||
gtatgttccaatcagtaacttttgatgt-taaaatattccatgttgagagaagaaggggtattctagtgttatgttgtctgcttgtctgactgaacttcattccatcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGACCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATAT

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G45140.1 (Glycine max), 3'ss of exon 5
-------------gatgcctttaaaggcatgtacttcctcataatttttgtggtgaaaaaatttatttgtt-taatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
               |  ||||  | |  |  | |    |||  |    |  |       |||    |||| |  ||| | ||||| || || | |  |||     |||| |||||||||| |||| ||||||||||||||||||||  |||| ||||| ||||| || ||||| |||||||||||||| |||||||| || ||||||||||||
gtatgttccaatcagtaacttttgatgt-taaaatattccatgttgagagaagaaggggtattctagtgttatgctgtctgcttgtctgactgaacttcattgcatcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGACCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATAT

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ29161 (Selaginella moellendorffii), 3'ss of exon 5
gatgcctttaaaggcatgtacttcctcataatttttgtggtgaaaaaatttatttgtttaatgtgttcttgtttgtctcaccaacatgc-tgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
                                             |   || |||  |||   | |   |||   |  ||      ||  | | ||| ||| |||||| | || ||||||||||| ||||| || |||||||| ||||||||||| || || || |||||||| || || ||||| || ||||| || || 
-------------------------------------------gtatggtttttttcttatgttctcgatgtaaatgacatttctgtgtgttctattacagTGTTGATAGGAACAAATATCAGATCCAAATACCTTTGCCCCCTAAGATTGATCCGAGCGTCACTATGATGACGGTGGAGGAGAAGCCCGATGTAACTTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055270|gb|FQ441868.1|FQ441868
EST:     CTGGGTGACAAAGTTTCTCCAACTGATGTAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|110381635|gb|EC934981.1|EC934981
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|46917525|gb|CN546854.1|CN546854
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|351037539|gb|FQ462522.1|FQ462522
EST:     CTGGGTGACAAAGTTTCTCCAGCTGATGTAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|71858037|gb|DT007092.1|DT007092
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|71863099|gb|DT012154.1|DT012154
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|352798958|gb|FQ480807.1|FQ480807
EST:     CTGGGTGACAAAGTTTCTCCAACTGATGTAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|110700764|gb|EE077702.1|EE077702
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|294966728|gb|GW837747.1|GW837747
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|352786546|gb|FQ479753.1|FQ479753
EST:     CTGGGTGACAAAGTTTCTCCAACTGATGTAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|110710904|gb|EE087489.1|EE087489
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|351038545|gb|FQ464411.1|FQ464411
EST:     CTGGGTGACAAAGTTTCTCCAACTGATGTAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|110424138|gb|EC990494.1|EC990494
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|110718922|gb|EE096307.1|EE096307
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|71858529|gb|DT007584.1|DT007584
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTG
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTT-GATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTG
EST: gi|161718866|gb|FC067339.1|FC067339
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|110688813|gb|EE067797.1|EE067797
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|71864317|gb|DT013372.1|DT013372
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|71859940|gb|DT008995.1|DT008995
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|351047798|gb|FQ459018.1|FQ459018
EST:     CTGGGTGACAAAGTTTCTCCAACTGATGTAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|110727512|gb|EE104359.1|EE104359
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATANAAGAAGGCATGCGTGTTGG                         GGTTGATCNAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|71861538|gb|DT010593.1|DT010593
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCA
EST: gi|71863095|gb|DT012150.1|DT012150
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|110686619|gb|EE064467.1|EE064467
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
EST: gi|161715740|gb|FC066144.1|FC066144
EST:     CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGG                         GGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA
genomic: CTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttca ... gccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttatttgtttaatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT
                             gtctcac  putative branch site (score: 3)
     tatttgtttaatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatgcctttaaaggcatgtacttcctcataatttttgtggtgaaaaaatttatttgtttaatgtgttcttgtttgtctcaccaacatgctgccattgcagGGTTGATCGAAATAAATATCAGATTCAAATTCCCTTGCCCCCAAAGATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
gatgcct
- - - - - - -gcatgta
- - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accaaca