Sequence
atgc intronic sequence ATGC exonic sequencegtaagccatcaaggaatttgcttattgtaccttattactctttttatgatccttgaactatttttcttctgttagagtgttcattttttaaagttttccactattttctgttccagCAAAAGACAAGCTTTTCCCAGTTGCTGATGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G07460.1 (Glycine max), 3'ss of exon 5
gtaagccatcaaggaatttgcttattgtaccttattactctttttatgatccttgaactatttttcttctgttagagtgttcattttttaaagttttccactattttctgttccagCAAAAGACAAGCTTTTCCCAGTTGCTGATGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATG
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----------------gtaagtaacagtaatttgctactg-----ataaacttggtaat-tttatcaccactcaaggtggggtcttatgcatgcttgcc--tattacttg---cagCAAAAGAAGAGCTTTTTCCTGTTGCTGATGCAACTACATTTTTCACTGATCTTCATCACATACTTCGAGTCATAGCAGCAGGGAATATAAGAACTTTATG
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G29470.1 (Glycine max), 3'ss of exon 6
gtaagccatcaaggaatttgcttattgtaccttattactctttttatgatccttgaactatttttcttctgttagagtgttcattttttaaagttttccactattttctgttccagCAAAAGACAAGCTTTTCCCAGTTGCTGATGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATG
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----------------gtaagtaacaggaatttgtta-----ttgataaacttggtaat-tttatcaccactcaaggtgggatcttatgcatgcttgcc--tattacttg---cagCAAAAGAAGAGCTTTTTCCTGTAGCTGATGCAACTACATTTTTCACTGATCTTCATCACTTACTTCGAGTCATAGCAGCAGGGAATATAAGAACTTTATG
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ17267 (Selaginella moellendorffii), 3'ss of exon 4
gtaagccatcaaggaatttgcttattgtaccttattactctttttatgatccttgaactatttttcttctgttagagtgttcattttttaaagttttccactattttctgttccagCAAAAGACAAGCTTTTCCCAGTTGCTGATGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATG
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------------------------------------------------------gtacttactttctt--accaacttttccttgcaactaaggttttaataactgtgtaatc-agCCAAAGAGGAACTCTTCCCGGTTGCTGATGCTACAACCTTTTTTACTGACATGCATAGGATACTTCGAATCGTCTCACTCGGCAATGTTCGAACTCTCTG
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ30909 (Selaginella moellendorffii), 3'ss of exon 4
gtaagccatcaaggaatttgcttattgtaccttattactctttttatgatccttgaactatttttcttctgttagagtgttcattttttaaagttttccactattttctgttccagCAAAAGACAAGCTTTTCCCAGTTGCTGATGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATG
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------------------------------------------------------gtacttattttctt--accaacttttccttgcaactaaggttttaataactgtgtaatc-agCCAAAGAGGAACTCTTCCCGGTTGCTGATGCTACAACCTTTTTTACTGACATGCATAGGATACTTCGAATCGTCTCACTCGGCAATGTTCGAACTCTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcttctgttagagtgttcattttttaaagttttccactattttctgttccagCAAAAGACAAGCTTTTCCCAGTTGCTGATGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATG
ttttccactattttct CT-rich tract
ttcattttttaaagtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagccatcaaggaatttgcttattgtaccttattactctttttatgatccttgaactatttttcttctgttagagtgttcattttttaaagttttccactattttctgttccagCAAAAGACAAGCTTTTCCCAGTTGCTGATGCAACAACCTTTTTTACTGATCTGCATCACATACTTAGAGTAATAGCAGCTGGGAATATTCGAACCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG