1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttaacatcccaaaacacgtcttggagcttatttgatttcatggataagcagtttgtgcctaactattactttttctcatttgcttttcccttgtgcagCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAGATAAGATCAAGCTTCCAGCCTTTTTGTCAAGTGATGCGCATTCTGTGT
species | Vitis vinifera |
transcript | Vv08s0058g01440.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAG CCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAEST: gi|110362604|gb|EC926149.1|EC926149
genomic: CAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAGgttagctttc ... ccttgtgcagCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAA
EST: CAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAG CCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAEST: gi|30252598|gb|CB970149.1|CB970149
genomic: CAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAGgttagctttc ... ccttgtgcagCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAA
EST: CAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAG CCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAEST: gi|30252676|gb|CB970227.1|CB970227
genomic: CAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAGgttagctttc ... ccttgtgcagCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAA
EST: CAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAG CCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAA
genomic: CAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAGgttagctttc ... ccttgtgcagCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAA
ataagcagtttgtgcctaactattactttttctcatttgcttttcccttgtgcagCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAGATAAGATCAAGCTTCCAGCCTTTTTGTCAAGTGATGCGCATTCTGTGT
gcctaac putative branch site (score: 2)
ctattactttttctca CT-rich tract
taactattacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttaacatcccaaaacacgtcttggagcttatttgatttcatggataagcagtttgtgcctaactattactttttctcatttgcttttcccttgtgcagCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAGATAAGATCAAGCTTCCAGCCTTTTTGTCAAGTGATGCGCATTCTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - catccca
- - - - - - -aaacacg
- - - - - - - - - - - -tggagct
- - - - - - - - - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctaa