Sequence
atgc intronic sequence ATGC exonic sequencegtattcaacagtgccttttctgttaaatgcttaattttttaatgtggtgattttggttgtaatgatgctagaattgatatcattattctctgattctctggattttaataagattggttgatcttctggcagCTCCACGATTGGAATGCTTCTGTTTCCTCTGGATCTGCAAGGGATTGCATTCTGCTTGCAGCCTGTGAAGCACATGAAACTCTTCCTCAGAGTGCTGAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 5
gtattcaacagtgccttttctgttaaatgcttaatttttta-atgtggtgattttggttgtaatgatgc-tagaattga---tatcattattctctgattctctggattttaataagattggttgatcttctggcagCTCCACGATTGGAATGCTTCTGTTTCCTCTGGATCTGCA---AGGGATTGCATTCTGCTTGCAGCCTGTGAAGCACATGAAACTCTTCCTCAGAGTGCTGAAT
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gtatgctaca-tgc---ttctaattaacatatgtttctctgtgctcgaagatgaaggtcatcatgatttatgggcttgtttttgtttttgttcctggattgtctaatattcataacgact--tttgtttactt-cagCGCCTAGATTGGAGT---TCTAGCTCCTCTGCATCTTCACGGAAGGACTGCATTCTTCTTGCTGCCTGTGAGGCACATCAAACTCTTCCTCAGAGTGCAGAAT
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 5
gtattcaacagtgccttttctgttaaatgcttaattttttaatgtggtgattttggttgtaatgatgctagaattgatatcattattctctgattctctggattttaataagattggttgatcttctggcagCTCCACGATTGGAATGCTTCTGTTTCCTCTGGATCTGCAAGGGATTGCATTCTGCTTGCAGCCTGTGAAGCACATGAAACTCTTCCTCAGAGTGCTGAAT
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gtatccactcaaaaccatgttattaaatacc--atataataa------aactgcaaatgtattgttactgactttgtcttttttgtaatttggatgccaaatttgttactggacttgttattgata----agCTTCATGAATGGAGTCCTTCCAACTCCTCTGTGTCCCAAAGGGATTGCATTCTGCTTGCAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAAT
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 5
gtattcaacagtgccttttctgttaaatgcttaattttttaatgtggtgattttggttgtaatgatgctagaattgatatcattattctctgattctctggattttaataagattggttgatcttctggcagCTCCACGATTGGAATGCTTCTGTTTCCTCTGGATCTGCAAGGGATTGCATTCTGCTTGCAGCCTGTGAAGCACATGAAACTCTTCCTCAGAGTGCTGAAT
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gtatccactcaaaaccatgttgttaaatacgta---taataaaactgcaaatgtatttgtactgact------ttgtcttttttgtaatttggatgccaaatttgttactggacttgttattgata----agCTTCATGAGTGGAGTGCTTCCAACTCCTCTGTGTCCCAAAGGGATTGCATTCTGCTTGCAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAAT
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 3'ss of exon 5
gtattcaacagtgccttttctgttaaatgcttaattttttaatgtggtgattttggttg-taatgatgctagaattgatatcattattctctgattctctggattttaataagattggttgatcttct--ggcagCTCCACGATTGGAATGCTTCTGTTTCCTCTGGATCTGCAAGGGATTGCATTCTGCTTGCAGCCTGTGAAGCACATGAAACTCTTCCTCAGAGTGCTGAAT
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---------------------gtaaaggaaacaaccacttcacttatagaacacatctcctgtcgagtttaggactcgagtctgtaattttcgttccataag---ttgataaaattcatatactctttacgccagCTTCATGATTGGGGTTCTTCTGGTTCCTCTGGATCCTCAAGGGACTGCATTCTACTTGCTGCTTGTGATGTACATGAGACACTTCCTCAGAGCGTTGAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcattattctctgattctctggattttaataagattggttgatcttctggcagCTCCACGATTGGAATGCTTCTGTTTCCTCTGGATCTGCAAGGGATTGCATTCTGCTTGCAGCCTGTGAAGCACATGAAACTCTTCCTCAGAGTGCTGAAT
tcttct CT-rich tract
attttaataagatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattcaacagtgccttttctgttaaatgcttaattttttaatgtggtgattttggttgtaatgatgctagaattgatatcattattctctgattctctggattttaataagattggttgatcttctggcagCTCCACGATTGGAATGCTTCTGTTTCCTCTGGATCTGCAAGGGATTGCATTCTGCTTGCAGCCTGTGAAGCACATGAAACTCTTCCTCAGAGTGCTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC