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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaactcaccctgttgcttggatcaatgtatcttacttgtaagtcgttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacagGGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCAATATCAAATTGCTTGAGAGAACCTGTGGGCCCAAATAATTGCTCAGAGGTAAAATAGTACCGCC

Basic information

species Vitis vinifera
transcript Vv08s0040g01400.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G06430.2 (Glycine max), 3'ss of exon 5
gtgaactcaccctgttgcttggatcaatgtatcttacttgtaagtc--gttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacagGGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCAATATCAAATTGCTTGAGAGAACCTGTGGGCCCAAATAATTGCTCAGAGGTAAAATAGTACCGCC
                            || |||| ||| | |||   | |  || |  ||    |||  |  || |||  | |    |     ||| ||||||||||||||| || |||||||| || || |||||||| || | ||||||||||||||| || || || |||||||| || ||||| || || |  |   
-------------------------gtagtctcttgcttctcagtgtagctatttttaattagcctagtta--acggtttaacttaacaccaaatgatacagGGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGCCTAATAATTGTTCTGAGGTGAATTAATTTCATT

upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G06430.1 (Glycine max), 3'ss of exon 5
gtgaactcaccctgttgcttggatcaatgtatcttacttgtaagtc--gttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacagGGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCAATATCAAATTGCTTGAGAGAACCTGTGGGCCCAAATAATTGCTCAGAGGTAAAATAGTACCGCC
                            || |||| ||| | |||   | |  || |  ||    |||  |  || |||  | |    |     ||| ||||||||||||||| || |||||||| || || |||||||| || | ||||||||||||||| || || || |||||||| || |||                
-------------------------gtagtctcttgcttctcagtgtagctatttttaattagcctagtta--acggtttaacttaacaccaaatgatacagGGGGAAGATGCATCTATTGAAGCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGCCTAATAATTGTTCTGAG----------------

upper sequence: Vv08s0040g01400.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G52970.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgaactcaccctgttgcttggatcaatgtatcttacttgtaagtcgttgcttatggttttattagaaagtacagttatattatcaaatggctgaaa--cagGGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCAATATCAAATTGCTTGAGAGAACCTGTGGGCCCAAATAATTGCTCAGAGGTAAAATAGTACCGCC
        |    | | | | ||| ||   | |  |         | ||  || |  |||| || | | ||  |      |||  | ||||||  ||  ||||| |||||||| || ||||||||||| || ||||| ||||||| ||||||  ||||||| || || | ||| || ||  ||||| |  |||         
-----gcaagaaagctacctcgattaaaaaaaccgatgatcgccactttctttgtt-ttttgtttgcatgtctaaactgtttacaatatggcttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCGAAACAACTGTGCAGAGATCCAATGAAGTATAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689960|gb|EE066639.1|EE066639
EST:     GGACCCGTTTGGCTGGGAAGTATGGAAATATATTTTACTGGAAAGAGAAA                         GGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCA-TATCAAATTGCTTG
genomic: GGAGCCGTTTGGCTGGGAAGTATGGAAACATATTTTACTGGAAAGAGAAGgtgaactcac ... gctgaaacagGGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCAATATCAAATTGCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttgcttatggttttattagaaagtacagttatattatcaaatggctgaaacagGGGGAAGATGCTTCCATTGAAGCTGCTGTCATGGCAATATCAAATTGCTTGAGAGAACCTGTGGGCCCAAATAATTGCTCAGAGGTAAAATAGTACCGCC
            ttttattagaaagtac  TA-rich tract