1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aatttccaatgaagttttcccttttagctaaattttctggtcgtcattaatagcacatattattctcactgattctcattatttttgatcgaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTCAGTTTATCCTAGAGGAGGAGATATCATCTCTTCGAGGTGCTGATTGTA
species | Vitis vinifera |
transcript | Vv08s0032g01230.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAG GTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTEST: gi|352778146|gb|FQ468808.1|FQ468808
genomic: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAGgtgcaagttt ... gaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCT
EST: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAG GTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTEST: gi|352764590|gb|FQ472947.1|FQ472947
genomic: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAGgtgcaagttt ... gaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCT
EST: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAG GTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTEST: gi|352773574|gb|FQ472356.1|FQ472356
genomic: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAGgtgcaagttt ... gaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCT
EST: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAG GTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTEST: gi|352768279|gb|FQ469454.1|FQ469454
genomic: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAGgtgcaagttt ... gaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCT
EST: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAG GTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTEST: gi|352782101|gb|FQ470003.1|FQ470003
genomic: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAGgtgcaagttt ... gaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCT
EST: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAG GTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTEST: gi|352763797|gb|FQ473500.1|FQ473500
genomic: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAGgtgcaagttt ... gaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCT
EST: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAG GTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCT
genomic: CTGCATTCAAAATGAAATCTGAGTTTCTGAAAGCTGTTGCAGATAACCAGgtgcaagttt ... gaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCT
attaatagcacatattattctcactgattctcattatttttgatcgaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTCAGTTTATCCTAGAGGAGGAGATATCATCTCTTCGAGGTGCTGATTGTA
attctcattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttccaatgaagttttcccttttagctaaattttctggtcgtcattaatagcacatattattctcactgattctcattatttttgatcgaggatatagGTACTGGTAGTTTCAGGGGAGACAAGTTGTGGTAAAACGACACAGCTCCCTCAGTTTATCCTAGAGGAGGAGATATCATCTCTTCGAGGTGCTGATTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -ccaatga
- - - - - - - - - ccctttt
- - - - - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcactg