Sequence
atgc intronic sequence ATGC exonic sequence...gtcaataatgttagtagtataatttacatcacaattaagatttcatgctaatcaatttggtaaaatagaacttcaactttctttttcttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G11100.1 (Glycine max), 3'ss of exon 6
gtcaataatgttag----tagtataatt-tacatcacaattaagatttcatgctaatcaatttggtaaaatagaacttcaactttctttttcttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTG
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-tcaaaatttttgcatctgaatattcttatatatgccaatgtccattatctgtca-tatgtccatggccttcggtgttaaataatgtatttctttt---ctctagATTATCCTGTCTATCACACTGCTTTCGATTCCTATAACTGGATGACAAAGTTTGGAGATCCATTCTTTCAGCGCCATGAAGCTG
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 5
--gtcaataatgttagtagtataatttacatcacaattaagatttcatgctaatcaatttggtaaaatagaac--ttcaactttctttttcttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTG
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aaattaa-attatttctagctcaatatgccatgtctataatgtcatacatccataggcttgggtatctaatatgatgtaataatctctttcg---gatttccagATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTG
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G39080.1 (Glycine max), 3'ss of exon 5
-------------------------------------------------------------------gtcaataatgttagtagtataatttacatcacaattaagatttcatgc--taatcaatttgg-----taaaa--tagaacttcaactttctttttcttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTG
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gtatgtatctcatgattcactgtccagtcccagattctttaggcatatattgttttgtaatacaaaaattaa-attatttctagctcaatatgccatgtctataatatgtcatatatccatggacttggatttctaataattagtgatgtaataataatatctttcctatttccagATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTG
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G54720.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcaataatgttagtagtataatttacatcacaattaagatttcatgcta-atcaatttggta-aaatagaacttcaact---ttctttttcttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTG
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---gtcaatgagaacatgattccttaagtcttgcaaaatattctataatgtgatgttttaatgcaagtaataccaataatgtatgttgtttatcctttctttcagATTATCCTGTCTATCACACTGCATTTGACTCCTATGATTGGATGATCCACAACGCAGATCCATTGTTTCACCGTCATGTTGCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110377414|gb|EC942476.1|EC942476EST: ACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG ATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACC
genomic: ACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAGgtacatcact ... tgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctaatcaatttggtaaaatagaacttcaactttctttttcttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTG
tgctaat putative branch site (score: 2)
cttcaactttcttttt putative PPT
aatttggtaaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcaataatgttagtagtataatttacatcacaattaagatttcatgctaatcaatttggtaaaatagaacttcaactttctttttcttttgtccttcagATTTTCCAGTCTATCACACTGCTTTTGACTCCTATGACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTG
- - - - - - - - - - - - - catcaca
- - - - - - - - - - - - - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaaa