1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagactatttgttgctgctttgagttcattctaacaattttcagttcttggagttcttgtttgaccataactttttgtggccccagAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGATCGATCAAGAACTGCAACAACTGT
species | Vitis vinifera |
transcript | Vv08s0032g00440.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAAATTGCCCGTTCTATAAAAGCCAAAGTTGAAGAACTCGACAAAGAG AATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGATEST: gi|110419016|gb|EC985205.1|EC985205
genomic: GAAAAATTGCCCGTTCTATAAAAGCCAAAGTTGAAGAACTTGACAAAGAGgtaagactat ... gtggccccagAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGAT
EST: GAAAAATTGCCCGTTCTATAAAAGCCAAAGTTGAAGAACTTGACAAAGAG AATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGATEST: gi|71865576|gb|DT014631.1|DT014631
genomic: GAAAAATTGCCCGTTCTATAAAAGCCAAAGTTGAAGAACTTGACAAAGAGgtaagactat ... gtggccccagAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGAT
EST: GAAAAATTGCCCGTTCTATAAAAGCCAAAGTTGAAGAACTTGACAAAGAG AATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGAT
genomic: GAAAAATTGCCCGTTCTATAAAAGCCAAAGTTGAAGAACTTGACAAAGAGgtaagactat ... gtggccccagAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGAT
taacaattttcagttcttggagttcttgtttgaccataactttttgtggccccagAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGATCGATCAAGAACTGCAACAACTGT
ctttttgt CT-rich tract
ataacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagactatttgttgctgctttgagttcattctaacaattttcagttcttggagttcttgtttgaccataactttttgtggccccagAATTTAGCCAATAGGCAGAAGCCTGGATGTGGAAAAGGAACAGGTGTAGATCGATCAAGAACTGCAACAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC