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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatctcaaatggcttaaaaaaaacataattttatttattacatcttcaaagttaaatatgagaaatgaatctttaacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA

Basic information

species Vitis vinifera
transcript Vv08s0007g09010.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77581907|gb|DV219914.1|DV219914
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110687388|gb|EE064765.1|EE064765
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|34550413|gb|CF518631.1|CF518631
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|34550493|gb|CF518711.1|CF518711
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110719520|gb|EE094721.1|EE094721
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGGCC-C
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTG-CTAC
EST: gi|110720771|gb|EE096986.1|EE096986
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCC
EST: gi|30303302|gb|CB980096.1|CB980096
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|349825963|gb|FQ415768.1|FQ415768
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATTGATGTGTCTGCTAC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAAT-GATGTATCTGCTAC
EST: gi|110367745|gb|EC931696.1|EC931696
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110713210|gb|EE088932.1|EE088932
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAA-GTTCAATGATGTATCTGCCACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110685290|gb|EE063541.1|EE063541
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|351015480|gb|FQ447309.1|FQ447309
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCCGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|46918518|gb|CN547847.1|CN547847
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGGGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110403744|gb|EC969476.1|EC969476
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110707831|gb|EE084680.1|EE084680
EST:     CAGAAAGCTTTCACAAACTATCTAGGAAGGCA-TAAGGCAGAATGGGGAG                         GAATATGATGCACCTTGCCCGGATTTCAA-GTTCAATGATGTATC
genomic: CAGAAAGCTTTCACAAACTATCTAGGA-GGCAATAAGGCAGATTGGG-AGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTG-ATTTCAAAGTTCAATGATGTATC
EST: gi|110720121|gb|EE095776.1|EE095776
EST:     GCCTGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAA-GTTCAATGATGTATCTGCCAC-
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|351013248|gb|FQ424953.1|FQ424953
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110384036|gb|EC948449.1|EC948449
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|30303234|gb|CB980028.1|CB980028
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110416702|gb|EC982699.1|EC982699
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|30129940|gb|CB915279.1|CB915279
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|26263619|gb|CA814682.1|CA814682
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|110402055|gb|EC968688.1|EC968688
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|352794409|gb|FQ481640.1|FQ481640
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|351040136|gb|FQ425222.1|FQ425222
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|46918517|gb|CN547846.1|CN547846
EST:     TAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: TAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|37190457|gb|CF609806.1|CF609806
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGAGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|351027863|gb|FQ448433.1|FQ448433
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|46919080|gb|CN548409.1|CN548409
EST:     GGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|26260233|gb|CA811296.1|CA811296
EST:     CCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: CCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|34319644|gb|CF372398.1|CF372398
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
EST: gi|349824260|gb|FQ417647.1|FQ417647
EST:     GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAG                         GAATATGGTGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC
genomic: GCCAGAAAGCTTTCACAAACTATCTAGGAGGCAATAAGGCAGATTGGGAGgtaacatctc ... taacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatttattacatcttcaaagttaaatatgagaaatgaatctttaacttgcagGAATATGATGCAACTTGCCTGATTTCAAAGTTCAATGATGTATCTGCTACCATTCTAATTGATCAA
                                          ctttaac  putative branch site (score: 3)
                                         tcttt  CT-rich tract
                ttcaaagttaaatat  TA-rich tract