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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACT

Basic information

species Vitis vinifera
transcript Vv08s0007g08960.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G15800.1 (Glycine max), 3'ss of exon 5
gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataa---tgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACT
                                                |||||   ||   | ||  |     || ||  |||      | |   || |   |  || |          | ||       |  |||||||||||| ||| | || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| || |||| |||
-----------------------------------------------gtttgttgattcataaaaattttgtttccactgcagtgttgttgaatctgtttcaatgaacagccgattaagttttcttccttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCTTTGGCCACTGAACCTCCCAATGATGGACT

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G32780.1 (Glycine max), 3'ss of exon 5
gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACT
                                             || ||  | | |   |||  | |  | |    ||       | |   || |   |  || ||        || ||       |  |||||||||||| ||| | || ||||| |||||||||||||||||| |||||||||||||||| ||||| ||||| ||||| || |||||||| || |||| |||
-------------------------------------------gtttgttgattcataaacattttgtttccactg-cagtgttgtcgaatctgtttcaatgaacaaccgatttcattttcttccttattttcagGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTCAACCTGATTATGGACACTCTGGGTGCTTTGGCCTTGGCCACTGAACCTCCCAATGATGGACT

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G31770.1 (Glycine max), 3'ss of exon 3
gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACT
                                             || || ||   |     |  | | ||  |  | ||        |   || |   |  || |  | | |   ||||     |  | |||||||||||| ||  | || ||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||  |||| || |||||||| ||||||| |||
-------------------------------------------gtttgttggttaatagaatttgttttcccttttataatc-tgttgactttgtttcaagcaacatggttgatagtcttc----cttctttcagGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G29010.1 (Glycine max), 3'ss of exon 6
gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACT
                                       ||    |  ||  ||   ||   |  | | ||  | |    | |  | | |  |   ||    || |  | | |   ||||     |  | |||||||||||| ||  | || ||||| ||||||||||||||||||||||| ||||||||||| || ||||| ||  |||| || |||||||| ||||||| |||
---------------------------------------gtttgttggttaatagaatt---tgttttcccttttattttctgttgaatttgtttcaa--gcaacatgggtgatagtcttc----cttctttcagGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACT

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacag-cagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACT
                                                   ||||    | | ||     ||| || || |   |  | |   |      ||  ||| | |  |     ||||        | |||||||||| ||  | || ||||| ||  |||||||||||||| |||| |||||||| || |||||||||||  | || ||||||||||| || || |   |
---------------------------------------------------gtacgacagaaaaaccaatcaaacaccatctttcttctagcgtttggtcaaatatagtaaccatttcttttggtttcttttccagGATCTGCTCCACTCACTGCTGTGCAACTGCTTTGGGTCAACATGATCATGGACACACTTGGTGCATTGGCTCTAGCAACAGAACCTCCCAATGAAGGTTT

upper sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgcgttggcccatggagctagtcttttcatttcatgtagtgctcttatttgtacttttgcataatatgccaatcaacaacagcagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACT
                                       ||      | |   ||   |||| ||| | |  | |||  |     | |||||   |   | |||| ||  |       |||| | |    |||||||||||| ||  | || || || ||  |||||||||| ||| |||| |||||||| || |||||||||||  | ||||| |||||||| ||||| |   |
---------------------------------------gtaagtaaaatcaaacacatgcacaattttc--accaatgatttttg-aataacagtttcagtaatgattgt-------tttgcacc--ttttcagGATCTGCGCCACTCACCGCAGTGCAACTGCTTTGGGTGAACATGATCATGGACACACTTGGTGCATTGGCTCTAGCGACCGAACCTCCCAACGAAGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcagcaataatgataataataataatgataaggatctttgaaacaacattcagGATCTGCCCCCTTTACGGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTCGGTGCATTGGCATTGGCGACAGAACCTCCAAACGATGCACT
       aataatgataataata  TA-rich tract