1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgttcaataaacagcatccaattttcttgagttagaaaagattctgaacgtgtccctagtcatcaattccttatggtactcctttttcatttttggcagGAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTGACTCCATTTCATTTCAATCAGATTCCAGAAAGTGATGACTCTAATGTCC
species | Vitis vinifera |
transcript | Vv08s0007g08560.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCATTCTGGCATCAATGGCTTGGTTGCATCGTTTGTTACACTTTTGCAG GAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTGEST: gi|71876123|gb|DT025178.1|DT025178
genomic: CTCATTCTGGCATCAATGGCTTGGTTGCATCGTTTGTTACACTTTTGCAGgtaggaaggg ... tttttggcagGAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTG
EST: CTCATTCTGGCATCAATGGCTTGGTTGCATCGTTTGTTACACTTTTGCAG GAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTG
genomic: CTCATTCTGGCATCAATGGCTTGGTTGCATCGTTTGTTACACTTTTGCAGgtaggaaggg ... tttttggcagGAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTG
tgaacgtgtccctagtcatcaattccttatggtactcctttttcatttttggcagGAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTGACTCCATTTCATTTCAATCAGATTCCAGAAAGTGATGACTCTAATGTCC
tactcctttttcattt CT-rich tract
tttttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttcaataaacagcatccaattttcttgagttagaaaagattctgaacgtgtccctagtcatcaattccttatggtactcctttttcatttttggcagGAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTGACTCCATTTCATTTCAATCAGATTCCAGAAAGTGATGACTCTAATGTCC
- - - aataaac
- - - - - - - gcatcca
- - - - - - - - - - - - - - - - - -gaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccctagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattcc