Sequence
atgc intronic sequence ATGC exonic sequencegtaggacagaaaaaaaggcactatatggaaagatagctaatatttttgttggtggttgatggatttcacttgttctgcagACACATTTGGAGACATCTATTGCTAGACACAAGGCTCATATAATGAAGTTAGAACTGATTTTGAGGCTACTGGATAATGATGAATTGAGTCCTGAGCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G04690.1 (Glycine max), 3'ss of exon 5
gta-ggacagaaaaaaaggcactatatggaaa-gatagctaatatttttgttggtggttgatggatttcacttgttctgcagACACATTTGGAGACATCTATTGCTAGACACAAGGCTCATATAATGAAGTTAGAACTGATTTTGAGGCTACTGGATAATGATGAATTGAGTCCTGAGCAGG
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gtatgaattataggacctatattttgtggaaatgatggcttacctttctcatggccattgacatgtttcttttgtttc-cagACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGGAGG
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G26850.1 (Glycine max), 3'ss of exon 5
gtagg-acagaaaaaaaggcactatatggaaagatagctaatatttttgt--tggtggttgatggatttcacttgttctg-cagACACATTTGGAGACATCTATTGCTAGACACAAGGCTCATATAATGAAGTTAGAACTGATTTTGAGGCTACTGGATAATGATGAATTGAGTCCTGAGCAGG
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gtatgtagtaaaggaaacacaatttatgagactgttgatgatttatctgtcatggctattcaaatgtttctttttgtttgtcagACACATCTAGAAACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGCAGG
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G07830.1 (Glycine max), 3'ss of exon 5
--gtaggacagaaaaaaaggcactatatggaaagatagctaatatttttgttggtggttgatggatttcacttgttctg-cagACACATTTGGAGACATCTATTGCTAGACACAAGGCTCATATAATGAAGTTAGAACTGATTTTGAGGCTACTGGATAATGATGAATTGAGTCCTGAGCAGG
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gtatatagtaaaggaaacacaatttattagactgttgatttatctaagtcatggctattcaaatatttctttttgtttgtcagACACATCTAGAAACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGGAGG
upper sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaggac--agaaaaaaaggcacta-tatggaaagatagctaatatttttgttggtggttgatgg----atttcacttgtt-------ctgcagACACATTTGGAGACATCTATTGCTAGACACAAGGCTCATATAATGAAGTTAGAACTGATTTTGAGGCTACTGGATAATGATGAATTGAGTCCTGAGCAGG
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gtaaaatctgataaaatatgcattggtatgcaaaatgctgtaatttcttctctcgtggtgagtcatgtcatttggcttgttgaccccctttcagACTCATCTTGAGACATCTATTACAAGACACAAGGATCACATAATAAAGTTGGAACTGATCTTGAGGCTTCTGGACAATGATGAATTAAGTCCAGAACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggaaagatagctaatatttttgttggtggttgatggatttcacttgttctgcagACACATTTGGAGACATCTATTGCTAGACACAAGGCTCATATAATGAAGTTAGAACTGATTTTGAGGCTACTGGATAATGATGAATTGAGTCCTGAGCAGG
tttcactt CT-rich tract
atagctaatattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggacagaaaaaaaggcactatatggaaagatagctaatatttttgttggtggttgatggatttcacttgttctgcagACACATTTGGAGACATCTATTGCTAGACACAAGGCTCATATAATGAAGTTAGAACTGATTTTGAGGCTACTGGATAATGATGAATTGAGTCCTGAGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG