Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaaccactaattcactactattctgatattttctgtgtttgtgtacaatattgtgaccttgatttactttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT

Basic information

species Vitis vinifera
transcript Vv08s0007g07290.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G27010.1 (Glycine max), 3'ss of exon 6
---------------------gtcagtaaccactaattcac------tactattctgatattttctgtgtttgtgtacaatattgtgaccttgatt--tactttca-atta--gGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT
                      |  |||   ||  ||  ||       ||     |  |||| |   | ||| |    |  ||  | |   |  ||  | |||||  ||||  ||||||||||||||| |||||| |||||||||| ||||| |||||||| ||| ||||||||||||| |||||| | |||||||| ||||| || ||||| |
gttggcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT

upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G27010.2 (Glycine max), 3'ss of exon 5
-----------------gtcagtaaccactaattcac------tactattctgatattttctgtgtttgtgtacaatattgtgaccttgatt--tactttca-att--agGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT
                  |  |||   ||  ||  ||       ||     |  |||| |   | ||| |    |  ||  | |   |  ||  | |||||  |||  |||||||||||||||| |||||| |||||||||| ||||| |||||||| ||| ||||||||||||| |||||| | |||||||| ||||| || ||||| |
gcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT

upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G08010.3 (Glycine max), 3'ss of exon 5
-------------------------------------gtcagtaac-cactaattcactactattctgatattttctgtgtttgtgta-caatattgtgaccttgatttactttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT
                                     || | | |  ||     ||| || | ||    | |||  | | |    | | |  || | |         || ||    |  |||||||||||||||| |||||| |||||||||| ||||| |||||||| ||  ||||||||||||| |||||| | |||||||| ||||| || ||||| |
gttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattac-agGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT

upper sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G18110.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcagtaaccactaattcactactattctgatattttctgtgtttgtgtacaatattgtgaccttgatttactttc---aattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT
|| || || |  |     |  |  | | |     |  || |  || ||     || |   ||  ||   |  ||||   ||  |||| || |||| | | |||||  ||||||| ||||| |||||| | || ||||  ||||| |||||||||||| | || |||||||||||||| |||||||
gtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtacttacacagtgcaatgttttccttaaacagGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTGAAGTTGCCTCATGCATATGTCATGGAATACAAGCCACACGATGCTTCTCTCCGCGACAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010406|gb|BQ795440.1|BQ795440
EST:     TCAATGAAAATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTTTAAAAAATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|27584274|gb|CB006969.1|CB006969
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110707560|gb|EE084097.1|EE084097
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110392292|gb|EC957611.1|EC957611
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|18458812|gb|BM437090.1|BM437090
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71868753|gb|DT017808.1|DT017808
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|77578922|gb|DV218274.1|DV218274
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32271452|gb|CD720611.1|CD720611
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32271176|gb|CD720335.1|CD720335
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|34416028|gb|CF414782.1|CF414782
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         NCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110398676|gb|EC965147.1|EC965147
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|30125564|gb|CB910903.1|CB910903
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71874537|gb|DT023592.1|DT023592
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71871671|gb|DT020726.1|DT020726
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110715382|gb|EE093367.1|EE093367
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32245473|gb|CD711292.1|CD711292
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTGTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110412503|gb|EC978253.1|EC978253
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110703618|gb|EE080622.1|EE080622
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|33410042|gb|CF215669.1|CF215669
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71868631|gb|DT017686.1|DT017686
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|22010193|gb|BQ795227.1|BQ795227
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTTTAAAAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110368476|gb|EC932455.1|EC932455
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|22010553|gb|BQ795587.1|BQ795587
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTTTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|161718984|gb|FC068639.1|FC068639
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCC
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCC
EST: gi|110409610|gb|EC975276.1|EC975276
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110395237|gb|EC960891.1|EC960891
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|27580004|gb|CB002699.1|CB002699
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71866632|gb|DT015687.1|DT015687
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110706237|gb|EE081585.1|EE081585
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAA                         GCTGTAATGGCTCTAATAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110709127|gb|EE084314.1|EE084314
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAA                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|87586503|gb|DY474749.1|DY474749
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110366710|gb|EC930626.1|EC930626
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|34416554|gb|CF415308.1|CF415308
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|33409969|gb|CF215596.1|CF215596
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|46910239|gb|CN545614.1|CN545614
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|71874294|gb|DT023349.1|DT023349
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32245941|gb|CD711760.1|CD711760
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110398076|gb|EC964178.1|EC964178
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|22010279|gb|BQ795313.1|BQ795313
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTTTAAAAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|254914253|gb|GR906354.1|GR906354
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110394098|gb|EC958585.1|EC958585
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110709277|gb|EE084597.1|EE084597
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|34320347|gb|CF373101.1|CF373101
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|349827438|gb|FQ422306.1|FQ422306
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|34415773|gb|CF414527.1|CF414527
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32249585|gb|CD715404.1|CD715404
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|161718168|gb|FC068899.1|FC068899
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110376805|gb|EC941884.1|EC941884
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|32248165|gb|CD713984.1|CD713984
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTNAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110417002|gb|EC983022.1|EC983022
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110703405|gb|EE080220.1|EE080220
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCGATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|37188704|gb|CF608053.1|CF608053
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110393740|gb|EC959193.1|EC959193
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
EST: gi|110393896|gb|EC959460.1|EC959460
EST:     TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAG                         GCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT
genomic: TCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagtaacc ... tttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatattttctgtgtttgtgtacaatattgtgaccttgatttactttcaattagGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT
                                        tttactttc  CT-rich tract
                                       atttactttcaatta  TA-rich tract