Sequence
atgc intronic sequence ATGC exonic sequence...aatgttacttgtgccatagcatttaagttgtgattatcatcccaatattcccaactgttaagaaacttcctaacttcaacaatttaatttgtacctgcagTGCACCTGTGGTTTTCATCACAACCTTTGTGACACTGTTTGCACTGGTTATTGCCATAACGAAAGATCTTCCAGATGTTGAGGGTGACCGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07200.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G15720.1 (Glycine max), 3'ss of exon 5
aatgttacttgtgccatagcatttaagttgtgattatcatcccaatattc--ccaactgttaagaaacttccta-acttcaacaatttaatttgtacctgcagTGCACCTGTGGTTTTCATCACAACCTTTGTGACACTGTTTGCACTGGTTATTGCCATAACGAAAGATCTTCCAGATGTTGAGGGTGACCGCAA
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gcttatagtggtgt--tagcttttcattcaatattttt-tttaggtgttcggttcatattttgggaacttattatatatttgttcttgtatctctgcctgcagCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGTGATCGCAA
upper sequence: Vv08s0007g07200.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G26820.1 (Glycine max), 3'ss of exon 5
aatgttacttgtgccatagcatttaagttgtgattatcatcc-caatattcccaactgttaagaaacttccta-acttcaacaatttaatttgtacctgcagTGCACCTGTGGTTTTCATCACAACCTTTGTGACACTGTTTGCACTGGTTATTGCCATAACGAAAGATCTTCCAGATGTTGAGGGTGACCGCAA
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gcttatagtggtgt--tagcttttcatccaatatttttttaggtgttaggttttatattttgggagcttattatatatttgttcatgtatctttgcctgcagCTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAA
upper sequence: Vv08s0007g07200.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G11945.1 (Arabidopsis thaliana), 3'ss of exon 5
aatgttacttgtgccatagcatttaagttgtgattatcatcccaatattccc----aactgttaagaaacttcctaacttcaacaatttaatttgtacctgcagTGCACCTGTGGTTTTCATCACAACCTTTGTGACACTGTTTGCACTGGTTATTGCCATAACGAAAGATCTTCCAGATGTTGAGGGTGACCGCAA
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-aaattagtcaaacttt-gtactcacaatgagagaggaactgtaggagctccccataatcgtgagtagatatatta--ctcaacttttgattcgctatttgcagTGCACCTGTGGCGTTCATCACATCTTTTGTGACACTGTTTGCACTGGTCATTGCTATTACAAAGGACCTTCCTGATGTTGAAGGAGATCGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcccaactgttaagaaacttcctaacttcaacaatttaatttgtacctgcagTGCACCTGTGGTTTTCATCACAACCTTTGTGACACTGTTTGCACTGGTTATTGCCATAACGAAAGATCTTCCAGATGTTGAGGGTGACCGCAA
ttcaacaatttaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgttacttgtgccatagcatttaagttgtgattatcatcccaatattcccaactgttaagaaacttcctaacttcaacaatttaatttgtacctgcagTGCACCTGTGGTTTTCATCACAACCTTTGTGACACTGTTTGCACTGGTTATTGCCATAACGAAAGATCTTCCAGATGTTGAGGGTGACCGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -cttgtgc
- - - - - - - catagca
- - - - - - - - - - - - - - - - - - tcatccc
- - - - - - - - - - - - - - - - - - - - - - - - tcccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaacaa