Sequence
atgc intronic sequence ATGC exonic sequence...agattcttagtgttgtagtgttcagagttatgattgtcagccctaggtgcacatgctttattttttggatgttcttgtcatctttcatttttcattgcagTCTACAGGAAAGCAGAGGATATGAACTACCACTCAGTTTGCTTGCATGTTCTTGCAGATTCTATACGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 3'ss of exon 4
-----------------agattcttagtgttgtagtgttcaga-gttatgattgtcagccctaggtgcacatgctttattttttggatgttcttg-tcatctttcatttttcattgc-agTCTACAGGAAAGCAGAGGATATGAACTACCACTCAGTTTGCTTGCATGTTCTTGCAGATTCTATACGCAG
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gtaagtactccagtatccaatccagagtcacctcttgtacagatgccagtgtatacatatctaaaatc-taagtttcacaatcgaaacatcattgatcaattgttgtctattaatgccagTTTACAGGAAAGCAGAGGATATGAATTATCACTCTGTATGTTTGCATGTTCTTGCCGATTCAGTACGGAG
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 5
agattcttagtgttgtagtgttcagagttatgattgtcagccctaggtgcacatgctttattttttggatgttcttg-tcatctttcatttttcattgcagTCTACAGGAAAGCAGAGGATATGAACTACCACTCAGTTTGCTTGCATGTTCTTGCAGATTCTATACGCAG
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gtacgggaagcaacttatatcctgttgcttctggtg-caaatggagatttgtacttgtttccctgcaagggttgtaaattaaacagaattatgattggcagTTTACAGGAATGCAGAGGATATGAATTACCACTCGGTCTGTTTGCATGTGTTGGCAGATTCAATACGGAG
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G33030.1 (Glycine max), 3'ss of exon 5
------agattcttagtgttgtagtgttca---gagttatgattgtcagccctaggtgcacatgctttattttttggatgttcttgtcatctttcatttttcattgcagTCTACAGGAAAGCAGAGGATATGAACTACCACTCAGTTTGCTTGCATGTTCTTGCAGATTCTATACGCAG
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gttagtattttttgaatgttcttagattcacttgatttaacctcttccctcttttgggc-cttgacctgcagCTTACAGAAATGTTTCTTCTGGAATTTGTC-TTGCAGCTTACAGAAATGCAGAAGATATGAATCACCACTCTGTTTTCCTGCATGTTCTTGCAGATTCCATTCGCAG
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G12100.1 (Arabidopsis thaliana), 3'ss of exon 5
----agattcttagtgttgtagtgttcagagttatgattgtcagccctaggtgcacatgctttattttttggatgttcttgtcatctttcatttttcattgcagTCTACAGGAAAGCAGAGGATATGAACTACCACTCAGTTTGCTTGCATGTTCTTGCAGATTCTATACGCAG
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tcgttgcttcttgaaattatctgtcccttctttacatatctaaaaaccacatgt-tatcttgaatttttttcttatattcataatatgcaatat---gctgcagCCTACAGAAAAGCAGAAGATATGAATTATCACTCCGTTTGCTTGCACGTCATATCAGATTCCATCCGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720919|gb|FC070323.1|FC070323EST: GAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTG TCTACAGGAAAGCAGAAGATATGAACTACCACTCA
genomic: GAATCTTATTGGCGTTTGGTTCTTCAGGAACTATGCTCGCATCAATCTTGgtgagtcctc ... ttcattgcagTCTACAGGAAAGCAGAGGATATGAACTACCACTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtgcacatgctttattttttggatgttcttgtcatctttcatttttcattgcagTCTACAGGAAAGCAGAGGATATGAACTACCACTCAGTTTGCTTGCATGTTCTTGCAGATTCTATACGCAG
ttcttgtcatctttca CT-rich tract
atgctttatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agattcttagtgttgtagtgttcagagttatgattgtcagccctaggtgcacatgctttattttttggatgttcttgtcatctttcatttttcattgcagTCTACAGGAAAGCAGAGGATATGAACTACCACTCAGTTTGCTTGCATGTTCTTGCAGATTCTATACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - -cagccct
- - - - - - - - - - - - - - - - - - - - - - - - -cacatgc