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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttcccttacacttcctccattttattatatatgtacttatacacaagatttcctaattgaatcttgtttgttccaaattctccttgtttaacagCGCTCTGGGGCAGTCTGCACCGAGCATGTCAGCCTTTGCCAAGGCAAAAGTTGCCGCTGCAAAAATTTTCCGTATAATTGACCACAAGCCAAATATTGAG

Basic information

species Vitis vinifera
transcript Vv08s0007g05060.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G34080.1 (Glycine max), 3'ss of exon 5
gtaagtgttcccttacacttcc---tccattttattatatatgtacttatacacaagatttcctaattgaatcttgtttgttccaaattctccttgt----ttaacagCGCTCTGGGGCAGTCTGCACCGAGCATGTCAGCCTTTGCCAAGGCAAAAGTTGCCGCTGCAAAAATTTTCCGTATAATTGACCACAAGCCAAATATTGAG
|| ||| ||    | || ||     |     | |||  |     |  | | ||    |     || || |||    |  |||    ||| |  ||||       |||| | | ||||||| |||||||| |||||| | || ||| | ||||| | |||||| ||||| || ||||||||||||||||| |||||||| |||||||| 
gtgagtattagtgtgcatttttgtgttatagtcattgaaacaacagcttttcattttaaggtttattttaataacatg-gttaaggatttttattgtgatgcacacagGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCGTTTACAAAGGCCAGAGTTGCTGCTGCGAAGATTTTCCGTATAATTGATCACAAGCCGAATATTGAT

upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G36820.1 (Glycine max), 3'ss of exon 5
gtaagtgttcccttacacttcctccattttattat----atatgtacttatacacaagatttcctaattgaatcttgtttgttccaaattc--tccttgttta-acagCGCTCTGGGGCAGTCTGCACCGAGCATGTCAGCCTTTGCCAAGGCAAAAGTTGCCGCTGCAAAAATTTTCCGTATAATTGACCACAAGCCAAATATTGAG
|| ||| |||   | || || |    |||  | ||    | ||  |   || ||    |  |  || || | |   ||  |||    ||||  |  |  |  | |||| | | ||||||| || ||||| |||||| | || ||| | ||||| | |||||| ||||| || ||||||||||||||||| |||||||||| |||||| 
gtgagtattcgtgtgcattttcatgctttagtcattgaaacatacaaccattcatttaaggtt-tattttagtaacgtg-gttaaggattcaattgtgatacacacagGGGTTTGGGGCAATCCGCACCAAGCATGGCTGCATTTACGAAGGCCAGAGTTGCTGCTGCGAAGATTTTCCGTATAATTGATCACAAGCCAAGTATTGAT

upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G20530.1 (Glycine max), 3'ss of exon 5
-------------------------------------------------gtaagtgttc--ccttacacttcctccattttatt-atatatgtacttatacacaagattt--cctaattgaatc--ttgtttgttccaaattctccttgtt-taacagCGCTCTGGGGCAGTCTGCACCGAGCATGTCAGCCTTTGCCAAGGCAAAAGTTGCCGCTGCAAAAATTTTCCGTATAATTGACCACAAGCCAAATATTGAG
                                                   || || |   |||||    |     |||| ||  ||| | |   | |  | ||  |  |  ||| ||  | |   ||     ||     || |  |  || |   || ||| | || ||||||||||| |||||| | || ||| | ||||||| |||||| |||||||| ||||| ||| | ||||| ||||||||   ||| || 
gtgagtactgttttctctgaattttcatgttttagcaaaccttagtggttaaactgattagccttagtaatttagaatttcatccatacagggcttaaggcccagaagctgacctcatctagtgggttaagactttttgtttttgttcattattgtagGGCTTTAGGCCAGTCTGCACCCAGCATGGCTGCATTTACAAAGGCAAGAGTTGCTGCTGCAAAGATTTTTCGTGTGATTGATCACAAGCCGGGTATAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacacaagatttcctaattgaatcttgtttgttccaaattctccttgtttaacagCGCTCTGGGGCAGTCTGCACCGAGCATGTCAGCCTTTGCCAAGGCAAAAGTTGCCGCTGCAAAAATTTTCCGTATAATTGACCACAAGCCAAATATTGAG
           tcctaat  putative branch site (score: 2)
                                      ttctccttgttt  putative PPT
              taattgaat  TA-rich tract