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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttaatctcatcattttttatgtttttgtcctttatttttgttatttgttatttatatccatgtgttatggttgtgtcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG

Basic information

species Vitis vinifera
transcript Vv08s0007g04710.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g04710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G44430.1 (Glycine max), 3'ss of exon 4
gtactttaatctcatcattttttatgttttt--gtcctttatttttgttatttgttatttatatccatgtgttatggttgtgtcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG
         | |  || ||| |||  |||||  ||| ||  ||    ||   | ||  || |  || ||| ||  |  |   |||||| ||||| || ||||| || |||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||||||
--------gtatactcttttcttaccttttttggtctttctttgcacttgcctttttcttttgcccctgtttttagtct---tcaatttcagGTGCCGAGCACGGAGATTGACAAGTCCACTCCAAAGTTCTTCTCGCACTGGGATCCTGACTCAAAGATGTTCACG

upper sequence: Vv08s0007g04710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G00840.1 (Glycine max), 3'ss of exon 4
gtactttaatctcatcattttttatgtttttgtcctttatttttgttat-ttgttatttatatccatgtgttatggttgtgtcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG
                ||||| | |  |||||  |||| |||    | |  | ||   | | |   ||  | ||   | |  || || ||||| || ||||| || |||||||| |||||||| || |||||||| ||||||||||| ||||| || |||||||||
--------------gtattttct-tacttttggactttctttgcactttgcttttgcctctgtttttgc-tcattactcta-cattttcagGTGCCCAGCACGGAGATTGACAAGTCCACTCCAAATTTCTTCTCGCACTGGGATCCTGACTCCAAGATGTTCACG

upper sequence: Vv08s0007g04710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G32600.1 (Arabidopsis thaliana), 3'ss of exon 5
-----------------------------------gtacttta-atctcatcattttttatgttttt----gtcc--tttatttttgtt--atttgttatttatatccatgtgttatggtt--gtgtcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG
                                     | | || |  |||||     ||||   | |    | ||    ||| || ||   |||  ||| | ||||  ||| ||| || ||  |  |   || |||||||||||||||||  |||| ||||| || || ||||| ||||| ||||||||||| ||||| || ||||| || 
gtatgtgttttttttttcttttattcgtgacatttacattctacaagtcatctgggattatagctctagtagcccaacatatcttggtcgaattgtttactgatattgatg-gttgtgttttcgcattggtttcagGTTCCTAGCACAGAGGTTGATAAATCAACCCCAAAGTTTTTCTCTCACTGGGATCCAGACTCCAAGATGTTTACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713132|gb|EE088784.1|EE088784
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCAAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|30134998|gb|CB920336.1|CB920336
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|110710951|gb|EE087592.1|EE087592
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCAAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|30133297|gb|CB918636.1|CB918636
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|110713768|gb|EE089980.1|EE089980
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|110686098|gb|EE063396.1|EE063396
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCAAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|156739019|gb|EV243140.1|EV243140
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCAAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|71872083|gb|DT021138.1|DT021138
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|71869160|gb|DT018215.1|DT018215
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|110698196|gb|EE075475.1|EE075475
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|161714376|gb|FC063217.1|FC063217
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|71869133|gb|DT018188.1|DT018188
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|294964013|gb|GW836888.1|GW836888
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCGAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|27584644|gb|CB007339.1|CB007339
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
EST: gi|161712620|gb|FC061943.1|FC061943
EST:     ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAG                         GTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG
genomic: ATCAGTATCTCCTGTTTGCAGCTGAACCATATGAGATAATTGCTTTCAAGgtactttaat ... tcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttttgttatttgttatttatatccatgtgttatggttgtgtcaattgcagGTTCCTAGCACAGAAATTGACAAATCCACTCCGAAGTTCTTCTCACACTGGGATCCCGACTCAAAAATGTTCACG
     ttttgttatttgttat  TA-rich tract