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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggtctttccccattcacagggctcacattaacctttttgattgattgaaaatgccaagttttatttaatttacctagtctgagtgcgtatgtgggtgtcccacttttgagatatgtgctcttttttgtttctatttctctcagttttgcattatctggaacactcttttgctgcagTTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACTGCAACTCCAGAAACAATAATGTTACATTTGAGCACATTTCCTTCAGGGA

Basic information

species Vitis vinifera
transcript Vv08s0007g04160.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g04160.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G07490.1 (Glycine max), 3'ss of exon 5
gtagggtctttccccattcacagggctcacattaacctttttgattgattgaaaatgccaagttttatttaatttacctagtctgagtgcgtatgtgggtgtcccacttttgagatatgtgctcttttttgtttctatttctctcagt-tttgcattatctggaacactcttttgctgcagTTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACTGCAACTCCAGAAACAATAATGTTACATTTGAGCACATTTCCTTCAGGGA
               || |    | |  |  ||    ||||| |   |||   |||  |     || |||     ||||  |||    |  ||||     |  | ||   ||   ||| |  | ||||  |||| | ||| |   ||  |  ||| |||||      ||  | |  ||||||||||||||| |||||||| || ||||| |||||||||||||| || |||||||||||  || |||| ||| | || ||||||||||| |||||||| ||
-------------gtatgctgctgtcctattttgttttttttaaacaatttctaattac----cttttttcccccaccttatcttta-gtttatgcaaagggacaacacatg---tatct-ttgttttgggtttttgtttttgcaagcatcagcaatatctc-----cttgtatcttgcagTTAATGCTGAAGCAGTTCTAAAGGGTACTAATGTAGATGGTGTATACGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGA

upper sequence: Vv08s0007g04160.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G21370.1 (Glycine max), 3'ss of exon 5
gtagggtctttccccattcacagggctcacattaacctttttgattgattgaaaatgccaagttttatttaatttacctagtctgagtgcgtatgtgggtgtcccacttttgagatatgtgctcttttttgtttctatttctctcagttttgcattatctggaacactcttttgctgcagTTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACTGCAACTCCAGAAACAATAATGTTACATTTGAGCACATTTCCTTCAGGGA
                |   | |   ||  |||    |||   |    ||   |||  |   ||||    |  ||| ||    | |||   |  |  || |   ||     ||  ||| | || ||||  |||| | ||| |   ||  |     ||| |    | ||  | |  |||||||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||||||  || |||| ||| | || ||||||||||| |||||||| ||
---------------gtatgctgctgtcctatttttttttaaaacaattttttaattaccttttttccccacattatct----ttagtttatgcgaaggggcaaca-----gatgtatct-ctgttttgggtttttgtttttgcaagcatcagcatatatc---cccttgtatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688788|gb|EC925730.1|EC925730
EST:     AAATCCACTCTTTTCCACTGATACAGCTGCTGCTCTTCGAGCTTCAGAAA                         TTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACT
genomic: AAATCCACTCTTTTCCACTGATACAGCTGCTGCTCTTCGAGCTTCAGAAAgtagggtctt ... tttgctgcagTTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgtttctatttctctcagttttgcattatctggaacactcttttgctgcagTTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACTGCAACTCCAGAAACAATAATGTTACATTTGAGCACATTTCCTTCAGGGA
                                         ctcttttgct  CT-rich tract
      tttctattt  TA-rich tract