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gtgctgctttttttctttttaatagtgcatcgtgtatccatttgaaattatctaaatatttttggttatgtgatgatggatatttgcatgtttcaatcacttatggatggttgtcattgatatcctgtagGAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGATGCGCTCCATCAGGAAGAAAGAAGTGGTTCCAAGGGTAGAAAGTGGCGTA
species | Vitis vinifera |
transcript | Vv08s0007g02270.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATTCATTCGGCGTCCCAAGGCTGTTATCACACGTTCACAGTATATCAAG GAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGATEST: gi|30254542|gb|CB971287.1|CB971287
genomic: CATTCATTCGGCGTCCCAAGGCTGTTATCACACGTTCACAGTATATCAAGgtgctgcttt ... tatcctgtagGAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGAT
EST: CATTCATTCGGCGTCCCAAGGCTGTTATCACACGTTCACAGTATATCAAG GAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGATEST: gi|161706925|gb|FC056806.1|FC056806
genomic: CATTCATTCGGCGTCCCAAGGCTGTTATCACACGTTCACAGTATATCAAGgtgctgcttt ... tatcctgtagGAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGAT
EST: -ATTCATTCGGCGTCCCAAGGCTGTTATCACACGTTCACAGTATATCAAG GAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGATEST: gi|110372187|gb|EC936337.1|EC936337
genomic: CATTCATTCGGCGTCCCAAGGCTGTTATCACACGTTCACAGTATATCAAGgtgctgcttt ... tatcctgtagGAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGAT
EST: CATTCATTCGGCGTCCCAAGGCTGTTATCACACGTTCACAGTATATCAAG GAAGCCACTGAAC
genomic: CATTCATTCGGCGTCCCAAGGCTGTTATCACACGTTCACAGTATATCAAGgtgctgcttt ... tatcctgtagGAAGCCACTGAAC
atggatatttgcatgtttcaatcacttatggatggttgtcattgatatcctgtagGAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGATGCGCTCCATCAGGAAGAAAGAAGTGGTTCCAAGGGTAGAAAGTGGCGTA
cattgat putative branch site (score: 4)
attgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctgctttttttctttttaatagtgcatcgtgtatccatttgaaattatctaaatatttttggttatgtgatgatggatatttgcatgtttcaatcacttatggatggttgtcattgatatcctgtagGAAGCCACTGAACTAGGTAAAAAGGCAAGAGACTTGAAGAAAGCGGCTGATGCGCTCCATCAGGAAGAAAGAAGTGGTTCCAAGGGTAGAAAGTGGCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT