Sequence
atgc intronic sequence ATGC exonic sequencegtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G42640.1 (Glycine max), 3'ss of exon 5
gtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgt-tttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
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-------------------------------gacatcatgtgtataaattagattctaattttat--tagtgtttgaaaacatcatcgtatgctaag----ataagactttttgtgtatgtgggaatattatggcagGCAGAAAATGTGACACACACGGGTCCAACGAAGCTAGTGCTGTACTTTACAGGAGCCACCAACATACTGTACACGTTTGGTGGACATGCAGTTACTGT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G17810.1 (Glycine max), 3'ss of exon 6
gtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgt-tttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
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-------------------attctaatttta----ttattgtttttaatgagtattt-------tattagtgtttgaaaacatcgttgtatgctaggat-------aatatttttgtgtgtggaaatattatggcagGCAGAAAATGTGACACACACGGGTCCAACGAAGCTAGTGCTGTACTTCACAGGAGCCACCAACATACTGTACACGTTTGGTGGACATGCAGTTACTGT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G28310.1 (Glycine max), 3'ss of exon 5
gtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
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--------------ttaaaaaaatattg-taaaattgtttatttcaaaacaacaaacaaa-------tggtcaatttctatgtgatattcatta---ttcaaca-----------tcttgcaaatcatgtttgtagGTGGAAAATGTCACGCACACGGGTCCAACAAAGCTAGTGTTATACTTCACTGGAGCCACTAACATCCTCTACACGTTTGGAGGACATGCTGTGACTGT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G09100.1 (Glycine max), 3'ss of exon 5
gtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtttgag-gttatggt--gctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
| | |||| |||| || || | | | | | | || || ||| | || | || | | || | | ||| ||| ||| || | ||| | | |||| ||||||||||||| || || ||||| ||||| ||||| |||||||| ||||| ||||||||||| |||||
--------------------------------gaactctttca-tgaaacacccttcaattgaaacagccaacaaaattgctcaattttatgtgatatgatattcaaca------ccatcttgcaaatcatgtttgtagGTGGAAAATGTCACGCACACGGGTCCATCAAAGCTAGTGCTATACTTCACTGGAGCCACTAACATACTCTACACGTTTGGAGGACATGCTGTGACTGT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G09140.1 (Glycine max), 3'ss of exon 4
gtattactcatcaaccatcatcatctttctagggtt-tatttctctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttg----ttttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
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-------------gtgataaacacttgtctatagcaacagtttttatggcatatacttgaaatattgaaacaa-----ctaaactact---agtcaattcttgtgttatgatattcaacatgttgcaaatcatggttgtagGTAGAAAATGTTACACACTCCGGTCCAACAAAGCTAATACTATACTTCACTGGAGCCACTAACATACTCTACACGTTTGGAGGACATGCTGTGACTGT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ18760 (Selaginella moellendorffii), 3'ss of exon 4
----------------------------------------------------gtattactcatcaaccatcatcatctttc--tagggtttatttctctgaatcagtgtttgaggttatggtgctgattttctatattgca-gtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
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gtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcattttcttttgctgctttgctacatcatgagatgatagaggatagattttaaacttcttgtataggcgtggtctaacatgaataattctcacacttcttcacttttgcagGACCCAGGTGTAAAGCATTCGGCCCCAAATAATCTCGTCCAATATTTCACTGGAGCCACCAACATCTTGTACACCTTTGGTGGCCATGCCGTCACTGT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ36050 (Selaginella moellendorffii), 3'ss of exon 4
---------------------gtattactcatcaaccatcatcatctttctagggtttatttct---ctgaatcagtgtttgag--gttatggtgctgattttctatattgca-gtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
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gtgagagaagcatctaaaaaagctccactggatgataagc-ttgtctcgtcaaagtttgctgtagaactagaattatctttcatttatcatgggatagattttaaacttcttacataggcgtggtctaacatcaataattctcacacttcttcacttttgcagGACCCAGGTGTAAAGCATTCGGCCCCAAATAATCTCGTCCAATATTTCACTGGAGCCACCAACATCTTGTACACCTTTGGTGGTCATGCCGTCACTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110685103|gb|EE063138.1|EE063138EST: CCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAG TCTGAAGGAGTGGAACACTCAGCTCCCACGAAGCTAGTGCTGTATTTTACT
genomic: CCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAGgtattactca ... ttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgcagtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
tgtttttttttttttg CT-rich tract
tgtttttttttttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACTGGCGCCACCAACATCCTCTACACCTTTGGTGGACATGCTGTTACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT