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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcatgagccgaaaagcttcttattttcctcttagcaatgctttttccctttccgtattctgaacttgaagatgcaaattgactttatcatgaattatttacctttttgaaccttcagtaattaacttcatgtgtcacctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG

Basic information

species Vitis vinifera
transcript Vv08s0007g01980.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713904|gb|FC062870.1|FC062870
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110689439|gb|EE065663.1|EE065663
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGGAATTG                         GAGTTGAGCACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110409702|gb|EC975372.1|EC975372
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110697690|gb|EE074900.1|EE074900
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|33406800|gb|CF212427.1|CF212427
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|30297109|gb|CB973903.1|CB973903
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATT-GANACTCTT
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGC-ACTCTT
EST: gi|110418075|gb|EC984190.1|EC984190
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTGGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|33409710|gb|CF215337.1|CF215337
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110713466|gb|EE089412.1|EE089412
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110711679|gb|EE088432.1|EE088432
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110687327|gb|EE064641.1|EE064641
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110409249|gb|EC974909.1|EC974909
EST:     CATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: CATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110718297|gb|EE094970.1|EE094970
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAAGAAATTG                         GAGTTGAGCACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|30321841|gb|CD005103.1|CD005103
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|71864932|gb|DT013987.1|DT013987
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTA
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTA
EST: gi|110380016|gb|EC945251.1|EC945251
EST:     GCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: GCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|29783602|gb|CB349901.2|CB349901
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|18459292|gb|BM437570.1|BM437570
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCT
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCT
EST: gi|110732758|gb|EE108326.1|EE108326
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110690336|gb|EE067344.1|EE067344
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTANCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|33406603|gb|CF212230.1|CF212230
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110396200|gb|EC961881.1|EC961881
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110401013|gb|EC967604.1|EC967604
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|161721407|gb|FC070435.1|FC070435
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG
EST: gi|110712994|gb|EE088527.1|EE088527
EST:     TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTG                         GAGTTGAGCACTTGCTTANGGATGTGAAGGATACAACCATTAGCACTCTTG
genomic: TTTTGTCCATGTCCCATCTGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtatgtcatg ... ctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatttacctttttgaaccttcagtaattaacttcatgtgtcacctttccctagGAGTTGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAG
                          aattaac  putative branch site (score: 2)
                                       tgtcacctttccct  putative PPT
                         taattaactt  TA-rich tract