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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtctacaaagtttcatcattggtggactatttttgtcttatgatgtgcaactttgtaattatatttgcctctttatttcaatgcagACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTG

Basic information

species Vitis vinifera
transcript Vv08s0007g01700.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G14780.1 (Glycine max), 3'ss of exon 5
----------gttgtctacaaagtttcatcattggtggactatttttgtcttatgatgtgcaactttgtaattatatttgcctctttatttcaatgcagACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTG
            || |   |   |  |||  | |    |  |||| |   ||||          ||||||| || ||||   ||||| |||   ||||||| ||||||||||||||||| ||||  || |||||| | ||||||||  | |||||| | ||||| || |||||||| ||||||||||||||||||||||
gtgatttaaaagtgaccggaggctagcattgtggagcaaacatttctcctttata---------tttgtaaata-atttatgtcttttttt--gtgcagACTATTTTGAAAATTCCAGGATTCACTGACAATGTTGTAACTCATCTTCTTGCTGGTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTTG

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G27120.1 (Glycine max), 3'ss of exon 4
gttgtctacaaagtttcatcattggtggactatttttgtcttatgatgtgcaactttgtaattatatttgcctctttattt-caatgcagACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTG
||  | || ||    | |     ||    | ||| | |    |  || | |  |||| || || ||  || || | | |||   |||||||| |||||||||||||| || ||||  || |||||| | ||||||||| | |||||| | ||||| || ||||| || ||||||||||||||||||||||
gtgatttaaaag---tgactggaggctagc-attgtggagcaaacattt-ctcctttatatttgtaaatgactatgtctttgttatgcagACTATTTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTG

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G42220.1 (Glycine max), 3'ss of exon 4
gttgtctacaaagtttcatcattggtggactatttttgtcttatgatgtgcaactttgtaattatatttg-cctctttatttcaatgcagACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTG
| |    | ||      |   |   |     | |    | || | || |      || || || ||| |  |||     |||  |||||||| |||||||||||||| || ||||  || |||||| | ||||| ||  | |||||| | || || || ||||| ||||||||| |||||||||| ||| 
ggtaatgaaaagacactagactgcattttggagtaaaattttgtaatctttcctcttttatttttatataacctaacagttttgatgcaGACTATTTTGAAAATTCCTGGATTCACCGACAATGTTGTAACTCACCTTCTTGCTGGTCTAGGAGCAGGATTTTTTGCAGTCTGTGTTGGCTCCCCTGTT-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407463|gb|CF213090.1|CF213090
EST:     ATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAG                         ACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTA
genomic: ATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGgttgtctaca ... ttcaatgcagACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTA
EST: gi|161718697|gb|FC066335.1|FC066335
EST:     ATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAG                         ACGATTTTGAAAATTC
genomic: ATGCTATTATAAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGgttgtctaca ... ttcaatgcagACGATTTTGAAAATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcttatgatgtgcaactttgtaattatatttgcctctttatttcaatgcagACGATTTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTG
                                tttgcctctttatttc  CT-rich tract
                 aactttgtaattatat  TA-rich tract