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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaagtcttaaaatacaaaagcacacccctttcatttctcattttttagagctttagcttagatgtttcatttgcagGCTAGTTACTACAGAGGGGAGATGCTCCCACTACTTAAGCGGCATAAGGTAATAAGATTTACCCACACTGACTCACGACTTGCGAATAATGGCCTTGCAG

Basic information

species Vitis vinifera
transcript Vv08s0007g01650.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G27000.1 (Glycine max), 3'ss of exon 4
gtatgaagtcttaa--aat--------acaaaagcacacccctttcatttctcattttttagagctttagcttagatgtttcatttgcagGCTAGTTACTACAGAGGGGAGATGCTCCCACTACTTAAGCGGCATAAGGTAATAAGATTTACCCACACTGACTCACGACTTGCGAATAATGGCCTTGCAG
||||| ||   |||  |||        |||| |    | |  ||||  ||||  |||  |  | |  | ||||||||| |||||||||||||||||||||||||||| ||||| || ||| |  | ||||| ||||||||  ||   ||||| ||||| || || || || || || |||||||||||  
gtatggagcactaaccaattctatctgacaacattgaaacaatttctattcttttttagtgcaacagtggcttagatgcttcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCGACATAAGGTTGTACAGTTTACTCACACAGATTCCCGGCTCGCCAACAATGGCCTTGCTT

upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G14950.1 (Glycine max), 3'ss of exon 4
----------gtatgaagtcttaaaatacaaaagcacacc--cctttcatttctcattttttagagctttagcttagatgtttcatttgcagGCTAGTTACTACAGAGGGGAGATGCTCCCACTACTTAAGCGGCATAAGGTAATAAGATTTACCCACACTGACTCACGACTTGCGAATAATGGCCTTGCAG
           ||   | |  ||    |||| |    | |     |||  |||||  ||  |  |    | |||||  || |||||||||||||||||||||||||||| ||||| || ||| |  | ||||  ||||  ||  ||   ||||| ||||| || || || || || || |||||||||||  
gtgtgcagcattaaacaattctattggacaacattgaaacaattattctgttctctcttagtgcaataatggcttatgtgcttcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCAACATACTGTTGTACAGTTTACTCACACAGATTCCCGGCTCGCCAACAATGGCCTTGCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacccctttcatttctcattttttagagctttagcttagatgtttcatttgcagGCTAGTTACTACAGAGGGGAGATGCTCCCACTACTTAAGCGGCATAAGGTAATAAGATTTACCCACACTGACTCACGACTTGCGAATAATGGCCTTGCAG
                                           tttcattt  CT-rich tract
           atttctcatttttta  TA-rich tract