Sequence
atgc intronic sequence ATGC exonic sequence...catgagcaatgtaaaatgtgagagtgcatgaggttgatgctttgttatgtaaatgccaacttgaagctgaactttgcttgtatatctctacatttggcagGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G15830.1 (Glycine max), 3'ss of exon 5
catgagcaatgtaaaatgtgaga---gtgcatgaggttgat--gctttgttatgtaaatgccaacttgaagctgaactttgcttgtatatctctacatttg-gcagGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCAT
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------ttcttttagatgagggaaacatatctggagttattttgcgtatgcttacatattttagtatgtgactgttgttctttggtacatttgggtttatatgcagGTAGAGTGACTCCAGAGAGTGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCAT
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G26690.1 (Glycine max), 3'ss of exon 7
catgagcaatgtaaa-atgtgagagtgcatgaggttgatgctttgttatgtaaatgccaacttgaagctgaactttgcttgtatatctctacatttggcagGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCAT
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tttagatgagggaaacatctgtggaattattctgcatatgcttacatattttagtatgtgactgttgtt---ctttggt-acatttgggttcatatg-caggtagAGTGACTCCACAGAGTGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCTT
upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G26690.2 (Glycine max), 3'ss of exon 1
catgagcaatgtaaaatgtgagagtgcatgaggttgatgctttgttatgtaaatgccaacttgaagctgaactttgcttgtatatctctacatttg-gcagGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCAT
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----------------------------------------------------------gtatgtgactgttgttctttggtacatttgggttcatatgcagGTAGAGTGACTCCACAGAGTGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687454|gb|EE064880.1|EE064880EST: GAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGAGAACAG GTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTG
genomic: GAGTTACAGCACCAATTTGGCTTTCACCCCTCCAGAGTATTTGAGAACAGgtgaatactg ... catttggcagGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgtaaatgccaacttgaagctgaactttgcttgtatatctctacatttggcagGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCAT
tctctac CT-rich tract
ttgtatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catgagcaatgtaaaatgtgagagtgcatgaggttgatgctttgttatgtaaatgccaacttgaagctgaactttgcttgtatatctctacatttggcagGTAGAGTGACACCAGAAAGTGTAGTGTACAGCTTTGGGACCTTGTTGCTTGATCTCTTGAGTGGCAAACATATTCCACCAAGCCAT
catgagc
- - - - - -taaaatg
- - - - - - - - - - - - -gcatgag
- - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gccaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagct